Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30306
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0433 + 3282195-3285185 32 0.46
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317... 31 1.1
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319... 30 1.8
12_01_0686 - 5855216-5858263 29 2.4
01_01_0430 + 3258438-3259200,3259929-3261454 29 4.2
12_01_0708 - 6137865-6140909 28 5.6
05_01_0136 + 915140-915487,915781-916392 28 5.6
04_03_0252 - 13517763-13517861,13518845-13519315,13519400-135196... 28 5.6
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298 28 5.6
03_03_0131 - 14706123-14706171,14706364-14706422,14706504-147067... 28 5.6
01_01_0418 - 3142659-3145622 28 5.6
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 28 7.4
03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643... 28 7.4
02_04_0474 - 23202739-23203011,23203103-23203469,23203592-232039... 28 7.4
01_03_0169 - 13405789-13407504 28 7.4
12_01_0730 + 6505759-6508806 27 9.8
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 27 9.8
11_01_0459 + 3546101-3548771,3548871-3549238 27 9.8
07_03_1363 - 26022333-26023225,26023319-26023451 27 9.8
04_03_0300 + 14092951-14093361,14093628-14093828 27 9.8
04_03_0291 - 13988932-13989132,13989399-13989809 27 9.8
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 27 9.8
01_03_0146 + 13120727-13121037,13121063-13121912,13122854-131235... 27 9.8
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 27 9.8
>01_01_0433 + 3282195-3285185
Length = 996
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 191 GQRGAQXGVQFAQRRHTELRHLNFGGNNKGILQVPDRGFD 310
G+R G+ A T LR+LN GGN+ Q+P GF+
Sbjct: 85 GRRLQSGGLDAAVFSLTSLRYLNLGGNDFNASQLPATGFE 124
>01_01_0420 +
3175544-3176696,3177035-3178581,3179623-3179688,
3179892-3179999
Length = 957
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/95 (29%), Positives = 42/95 (44%)
Frame = +2
Query: 179 LSDRGQRGAQXGVQFAQRRHTELRHLNFGGNNKGILQVPDRGFDGCMRQISINGVNLDLS 358
L D G A G+ A T L +LN NN G ++P GF+ R I + +NL S
Sbjct: 101 LGDWGLESA--GIDPALFELTSLEYLNLAYNNFGGSKIPSDGFE---RLIRLTHLNLSSS 155
Query: 359 ENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSE 463
+ + G SLVS + +Y V++ +
Sbjct: 156 GFTGQVPASIG-NLTSLVSLD-LSTYFMIVEIPDD 188
>08_02_0800 +
21330446-21330722,21331040-21331182,21331925-21331978,
21332065-21332130,21333075-21333096,21333347-21333460,
21334153-21334278,21334891-21334925,21335709-21335809,
21335911-21335971,21336482-21336572,21337657-21337842,
21338755-21338922,21339006-21339208,21339313-21339431,
21339910-21339928,21340092-21340130,21340238-21340465,
21340987-21341088,21341842-21341889,21343622-21343765,
21343873-21343968,21344224-21344325,21345188-21345274
Length = 876
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +2
Query: 299 RGFDGCMRQISINGVNLDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSENPQLT 478
RG DG RQ+++ VN S L + YG + SF+ + + + +N
Sbjct: 357 RGQDGAYRQLAVKCVNSTYSSRLPRYTLCYGSNELVMCSFSPLGAAILQIPACHKNKPPR 416
Query: 479 LKFKTAKPNGS 511
++ K N S
Sbjct: 417 HGYERTKINSS 427
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 212 GVQFAQRRHTELRHLNFGGNNKGILQVPDRGFD 310
G+ A R T L+HLN GN + Q+P GF+
Sbjct: 109 GLDHALFRLTSLKHLNLSGNIFTMSQLPATGFE 141
>01_01_0430 + 3258438-3259200,3259929-3261454
Length = 762
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 185 DRGQRGAQXG-VQFAQRRHTELRHLNFGGNNKGILQVPDRGFD 310
D G RG Q G + A T L +LN GGN+ ++P GF+
Sbjct: 98 DLGGRGLQSGGLDAAVFSLTSLGYLNLGGNDFNASRLPAVGFE 140
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 233 RHTELRHLNFGGNNKGILQVPDRGFD 310
R T LR+L+ GNN + Q+P GF+
Sbjct: 117 RLTSLRYLDISGNNFSMSQLPVTGFE 142
>05_01_0136 + 915140-915487,915781-916392
Length = 319
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 419 NGTDSYLRFVDVTSENPQLTLKFKTAKPNGSYSSTSAG-HRPR 544
N SY R +D+ +E+ TL T NGS ++ AG RPR
Sbjct: 169 NDISSYARPIDIAAEDSD-TLPSPTCADNGSSGTSRAGKKRPR 210
>04_03_0252 -
13517763-13517861,13518845-13519315,13519400-13519679,
13519747-13519829
Length = 310
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 577 LRAIEICCRALSRSVSC*RRRIGSVRFCGLELEGQLRVLAGHV 449
LR E+ R L SV+C +RR R C E +LRV+ ++
Sbjct: 222 LRVSEVGDRVLVVSVTCSKRRDAMARVCRALEELRLRVITANI 264
>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
Length = 439
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 112 AQPEHTMMVNGINWTLAGSLPSAL*PWTTRCSXRSPIRPAPTY 240
+QP H WTL GSL + +TR R P+R P +
Sbjct: 54 SQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPRPPVRRPPVH 96
>03_03_0131 -
14706123-14706171,14706364-14706422,14706504-14706770,
14706857-14707114,14707207-14707629,14707942-14708514
Length = 542
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 12 LVGEGGYFFSLLMQDGRVYLQVSLGNTED--LIIVGTTRAYNDGKWHKLDARRFL-AKCS 182
++G+GG + Q+ +++V NTED +I V + D ++A L +CS
Sbjct: 294 VIGKGGGIIKQIRQESGAFIKVDSSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCS 353
Query: 183 LTVDNE 200
D E
Sbjct: 354 EKTDPE 359
>01_01_0418 - 3142659-3145622
Length = 987
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 239 TELRHLNFGGNNKGILQVPDRGFDGCMRQISINGVNLDLSENLESIGMAYGCQFASLVSF 418
T LRHLN NN +P GF+ R + +NL S+ I G + +L+S
Sbjct: 79 TSLRHLNLAWNNFSGSHIPTIGFE---RLTELTYLNLSNSKFAGQIPNTIG-RLTNLISL 134
Query: 419 N-GTDSYLRFVD 451
+ TD +L +D
Sbjct: 135 DLSTDFFLIDLD 146
>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 317 MRQISINGVNLDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSENPQ 472
+R++ + G+N + E L S+ + +GC + L+ G D +D S P+
Sbjct: 1278 LRKLGVTGINKNNCEELCSVIVKHGCLQSLLLRAEGKDGLEGCLDGLSPPPK 1329
>03_03_0181 +
15162681-15162806,15164026-15164172,15164269-15164355,
15165659-15165793,15165883-15165987,15166079-15166170,
15166259-15166364,15166463-15166549,15166653-15167084
Length = 438
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = -1
Query: 616 RVVPFDSQQRVCRLRAIEICCRALSRSVSC*RRRIGSVRFCGLELEGQLRVLA 458
RVV +Q R CR+ + R +SRSV+ RIG+VR GL R LA
Sbjct: 317 RVVATGNQDRTCRVWDV----RNMSRSVAVLEGRIGAVR--GLRYSPDGRFLA 363
>02_04_0474 -
23202739-23203011,23203103-23203469,23203592-23203990,
23204060-23204397,23204558-23204782,23205025-23205073,
23205281-23205462
Length = 610
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 24 GGYFFSLLMQDGRVYLQVSLGNTEDL 101
GGYF + L ++G+VY +S G TE L
Sbjct: 331 GGYFSAFLSREGQVY-TISWGRTERL 355
>01_03_0169 - 13405789-13407504
Length = 571
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 14 GRGRRIFLLITDARWKGLLAGVIRQHRGFDNSWH 115
G +F+L +A W+ + A GFD WH
Sbjct: 181 GSAAHLFVLPFEAFWRWIQAAAAGISHGFDGMWH 214
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 185 DRGQRGAQXG-VQFAQRRHTELRHLNFGGNNKGILQVP 295
D G + Q G V A R T L+HLN NN + Q+P
Sbjct: 99 DLGGQNLQAGSVDPALFRLTSLKHLNLSSNNFSMSQLP 136
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 167 PCQVLSDRGQRGAQXGVQFAQRRHTELRHLNFGGNNKGILQVPDRGFDGCMRQISIN 337
P L ++GQ G + + R H + GN + +L+ DR MR+ +N
Sbjct: 577 PKNDLGEKGQTGVRMSCRVKNRTHHSGSLVTPEGNIEEMLKEHDRNIQAAMRKARLN 633
>11_01_0459 + 3546101-3548771,3548871-3549238
Length = 1012
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 239 TELRHLNFGGNN-KGILQVPDRGFDGCMRQISINGVNL 349
TELR+LNF NN KG +P+ + M +I I G N+
Sbjct: 191 TELRNLNFASNNIKG--NIPNEFSNFLMMEILILGGNM 226
>07_03_1363 - 26022333-26023225,26023319-26023451
Length = 341
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 93 EDLIIVGTTRAYNDGKWHKLDARRFLAKCS 182
EDL++V + + G W + R L +CS
Sbjct: 21 EDLVLVSYVQEHGPGNWRAVPTRTGLMRCS 50
>04_03_0300 + 14092951-14093361,14093628-14093828
Length = 203
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 275 KGILQVPDRGFDGCMRQISINGVNLDLSENLESIGMAYGCQFASLV-SFNGTDSYLRFVD 451
K I QV DR + MR I G NLD ++ + +YG +++V +N T + L VD
Sbjct: 7 KSISQV-DRAREA-MRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAALELVD 64
>04_03_0291 - 13988932-13989132,13989399-13989809
Length = 203
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 275 KGILQVPDRGFDGCMRQISINGVNLDLSENLESIGMAYGCQFASLV-SFNGTDSYLRFVD 451
K I QV DR + MR I G NLD ++ + +YG +++V +N T + L VD
Sbjct: 7 KSISQV-DRAREA-MRLIHAEGKNLDALQHALGLKASYGDGVSAMVLVYNATGAALELVD 64
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 174 WQGTGERPIYAIYHHCMLGLCQLLSN 97
W GT R I+ + CMLGL +LL N
Sbjct: 159 WVGTTRRNIFVAF--CMLGLAKLLLN 182
>01_03_0146 +
13120727-13121037,13121063-13121912,13122854-13123561,
13123596-13123943
Length = 738
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 174 WQGTGERPIYAIYHHCMLGLCQLLSN 97
W GT R I+ + CMLGL +LL N
Sbjct: 159 WVGTTRRNIFVAF--CMLGLAKLLLN 182
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 239 TELRHLNFGGNNKGILQVPDRGFDGCMRQISINGV 343
T L +LN GGN+ ++P GF+ + Q+ + +
Sbjct: 112 TSLEYLNLGGNDFNESEIPSAGFER-LSQVPVQSI 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,922,580
Number of Sequences: 37544
Number of extensions: 427664
Number of successful extensions: 1127
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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