Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30306
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 35 0.050
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.62
SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25) 29 2.5
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 29 3.3
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 28 5.7
SB_18294| Best HMM Match : Ctr (HMM E-Value=0.0092) 28 7.6
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 7.6
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = +3
Query: 21 EGGYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDN 197
E G F + + +G++ L++++G+ +++D KWHKL RR L + ++VDN
Sbjct: 570 EAGQFMDIFLVNGKLRLRMAIGSCSYAERT-VNGSFSDLKWHKLVIRRELEETVVSVDN 627
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +2
Query: 272 NKGILQVPDRGFDGCMRQISINGVNLDLSENLESIGMAYGCQFASLVSFNGTDSY 436
N +P GF GC+R I N DL L+ + GCQ AS D Y
Sbjct: 1193 NMDFPDIPYTGFKGCVRNIKDNHNLYDLKNPLKVVNAPEGCQLASACPECKNDGY 1247
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 33 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVD 194
F +++++ GRV L VSLG + + +DG+WH + R + + +D
Sbjct: 1090 FIAVVLRGGRVELFVSLGLDPVTVKMDKGPRLDDGEWHTVQVLRNMKDIEIIID 1143
>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 774
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 33 FFSLLMQDGRVYLQVSLGNTE-DLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLK 209
F ++ + +G+V + GN+ DL G YNDGKWH + + + +VD EV K
Sbjct: 488 FLTIGLLNGKVRFRCDSGNSPLDLETSGVQ--YNDGKWHHVHLDKNGLDITFSVDQEVKK 545
>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 27 GYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVL 206
GY + + + V G + T +Y+DG+W+ L R LA +LTV
Sbjct: 958 GYIYGVYLNMSGVTFYFKSGAQSYALSTNKT-SYSDGRWYNLRLTRGLANATLTVTPVNS 1016
Query: 207 KXESNSPSADIPS 245
+ +S S ++PS
Sbjct: 1017 QGVIDSVSINLPS 1029
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 33 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVD 194
F +L + + ++ +LG T ++ + RA DGKWH + R K L VD
Sbjct: 3865 FIALEIVERYLWFSYNLGYTGIPEVIKSDRAVTDGKWHHVTVIRDKKKGELLVD 3918
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Frame = +2
Query: 212 GVQFAQRRHTELRHLNFGGNNK-----GILQVPD----RGFDGCMRQISINGVNLDLS 358
G +F QR H G N + G QVP F GCM + INGVN ++
Sbjct: 4178 GTEFTQREFAVTPHNFLGANIRQWSLGGATQVPSGVTLEKFKGCMEDLKINGVNTPMN 4235
>SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 158 SPVPCQVLSDRGQRGAQXGVQFAQRRHTELRH-LNFGGNNKGILQVPDRGFDGCMRQISI 334
+PV C L R + + G QRRH ++RH N + + VP GF G + S
Sbjct: 270 APVTCSSLLSRDRSSRRSGSARIQRRHGDMRHSRNNSADMMDVQSVP--GFHGKLMPASS 327
Query: 335 NGV 343
+ V
Sbjct: 328 DSV 330
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 260 FGGNNKGILQVPDRGFDGCMRQISINGVNLDLSENLESIGMAYGC 394
F G G LQ R GC+R + +NGV + L +E + ++ GC
Sbjct: 1072 FIGGYSGNLQ-SSRNLIGCIRDVKVNGV-VKLPSEIELVRVSMGC 1114
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 33 FFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDA 158
F ++ + G+V VS G T NDG+WH L A
Sbjct: 1483 FIAIELSGGQVRFTVSTGGTPASATSRVDGGLNDGRWHSLTA 1524
>SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)
Length = 614
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/89 (22%), Positives = 40/89 (44%)
Frame = +3
Query: 3 LIYLVGEGGYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCS 182
+ + GE + + ++ G+V+ LG + R +DG+WH + R +
Sbjct: 475 IFFAKGELRDYIYIGIKYGKVFYDSDLGTGRSKVYAEGIRV-DDGEWHSVVITREKKTLA 533
Query: 183 LTVDNEVLKXESNSPSADIPSLDT*TSEG 269
++VDN K ++++ D +D S G
Sbjct: 534 ISVDNGRAKGQTDT-RGDFNKIDLPNSVG 561
>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1049
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 254 LNFGGNNKGILQVPDR-GFDGCMRQISINGVNLDLSENLESIGMAYGC 394
L GG G+ + GF GC+R I +NG D S +YGC
Sbjct: 997 LYIGGEPGGMREDGSNPGFIGCIRNIYVNGQRFDASRT-SGGNASYGC 1043
>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 48 MQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVD 194
M G V L++ LG E L++ ND +WH ++ +R L +D
Sbjct: 301 MISGNVVLKMDLGKGE-LVLSAGDGLLNDNRWHWVEIKRRGRHAKLVLD 348
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 57 GRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKXESNSPSAD 236
G+V L LG+ +I T NDG WH + R + L+VD+ ++ + +
Sbjct: 1562 GKVRLTADLGSGPGSVINPMT--VNDGDWHHITWSRQYKRLILSVDDVTMEMSTQGEQSV 1619
Query: 237 IPSLDT 254
+ D+
Sbjct: 1620 LDVADS 1625
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 139 LPSLYARVVPTIIKSSVLPNDTCK*TLPSCISNEKKYPPSPT 14
LP + A ++P I +S+ P T ++P + PP+PT
Sbjct: 227 LPHIQASLLPLIPNTSIPPTPTPHTSIPPTPTPHTSIPPTPT 268
>SB_18294| Best HMM Match : Ctr (HMM E-Value=0.0092)
Length = 267
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 305 FDGCMRQISINGVNLDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVD-VTSENPQLTL 481
F +Q + + LS + IG G F S++S R D TSENP T
Sbjct: 143 FHATTKQAQLLFEDWKLSSSTILIGSCAGVFFLSILSECVRALRSRIADQTTSENPNATT 202
Query: 482 KFKTAKPNGS 511
+KT+ P +
Sbjct: 203 TYKTSFPKST 212
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 27 GYFFSLLMQDGRVYLQVSLGNTEDLIIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNE 200
G F S+ + G V + LG ++ + + G+WH + A R+ SL +D+E
Sbjct: 299 GDFVSIAIVGGNVEFRYDLGYGR--AVIRSKKNITVGQWHTVVAERYRRDGSLILDSE 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,755,801
Number of Sequences: 59808
Number of extensions: 480771
Number of successful extensions: 1309
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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