Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30306
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 129 NDGKWHKLDARRFL 170
           NDGKWH + + + L
Sbjct: 346 NDGKWHNIYSEKGL 359


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 129 NDGKWHKLDARRFL 170
           NDGKWH + + + L
Sbjct: 346 NDGKWHNIYSEKGL 359


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 40  EKKYPPSPT 14
           EKKYPPS T
Sbjct: 339 EKKYPPSET 347


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 40  EKKYPPSPT 14
           EKKYPPS T
Sbjct: 339 EKKYPPSET 347


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 311 GCMRQISINGVNLDLSENLESIGMAYGCQFASLVSFN 421
           GC   ++ NG   DL +NL+ + +  G Q+  ++S N
Sbjct: 418 GCSGFVAFNGDQYDLKKNLK-VCLPPG-QYCDVISGN 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,756
Number of Sequences: 438
Number of extensions: 4269
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)