Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30306
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (... 31 0.88
At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1) id... 29 3.5
At1g66370.1 68414.m07538 myb family transcription factor (MYB113... 29 3.5
At4g26930.1 68417.m03875 myb family transcription factor (MYB97)... 28 6.2
At1g56650.1 68414.m06515 myb family transcription factor (MYB75)... 28 6.2
At3g58050.1 68416.m06471 expressed protein 27 8.2
At3g55620.1 68416.m06178 eukaryotic translation initiation facto... 27 8.2
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 27 8.2
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 27 8.2
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 27 8.2
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 27 8.2
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 27 8.2
At1g55610.1 68414.m06365 protein kinase family protein contains ... 27 8.2
At1g03430.1 68414.m00323 two-component phosphorelay mediator, pu... 27 8.2
>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
(ALDH3) nearly identical to mitochondrial aldehyde
dehydrogenase ALDH3 [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein
Length = 534
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 24 GGYFFSLLMQDGRVYLQVSLGNTEDL--IIVGTTRAYNDGKWHKLDA 158
G F +L ++G V QVS G+ ED+ + +A+++G W K+ A
Sbjct: 68 GKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTA 114
>At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1)
identical to chorismate mutase GB:Z26519 [SP|P42738]
[Arabidopsis thaliana]
Length = 340
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 378 PIDSRFSLRSRFTPLMLIC-LIQPSKPRSGTCSI 280
PI + L S + + C L QPSKPRSGT S+
Sbjct: 31 PISTLLPLPSTKSSFSVRCSLPQPSKPRSGTSSV 64
>At1g66370.1 68414.m07538 myb family transcription factor (MYB113)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 246
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 93 EDLIIVGTTRAYNDGKWHKLDARRFLAKC 179
ED+++ Y +GKWH++ R L +C
Sbjct: 17 EDILLRQCIDKYGEGKWHRVPLRTGLNRC 45
>At4g26930.1 68417.m03875 myb family transcription factor (MYB97)
contains Pfam profile: PF00249 myb-like DNA-binding
domain ;similar to anther-specific myb-related protein 2
GI:11066263 from [Nicotiana tabacum]
Length = 389
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 93 EDLIIVGTTRAYNDGKWHKLDARRFLAKC 179
ED + R Y +G W+ + + +LA+C
Sbjct: 28 EDETLAAYVREYGEGNWNSVQKKTWLARC 56
>At1g56650.1 68414.m06515 myb family transcription factor (MYB75)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB75) GI:3941507
Length = 248
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 93 EDLIIVGTTRAYNDGKWHKLDARRFLAKC 179
ED ++ Y +GKWH++ R L +C
Sbjct: 17 EDSLLRQCINKYGEGKWHQVPVRAGLNRC 45
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 284 LQVPDRGFDGCMRQISIN 337
L+VP RGF+G RQ+ +N
Sbjct: 714 LEVPSRGFNGSNRQLRVN 731
>At3g55620.1 68416.m06178 eukaryotic translation initiation factor
6, putative / eIF-6, putative similar to SP|O55135
Eukaryotic translation initiation factor 6 (eIF-6) (B4
integrin interactor) {Mus musculus}; contains Pfam
profile PF01912: eIF-6 family
Length = 245
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -1
Query: 325 LPHTTVEASIRHLQYSFVVPSEVQVSKLG--MSALG 224
+PHTT + ++HL+ S +P +V V ++ +SALG
Sbjct: 72 VPHTTTDQELQHLRNS--LPDQVVVQRIDERLSALG 105
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -1
Query: 535 VSC*RRRIGSVRFCGLELEGQLRVLAGHVDEAKVAVSTVERYQRSELASIRHADRF*ILT 356
VSC R+ V C +G+L AGH + KV + +E Q E HA I+T
Sbjct: 501 VSCIRKSASKVICCSFSYDGKLLASAGH--DKKVFIWNMETLQ-VESTPEEHAH---IIT 554
Query: 355 EIQVYSVDADLPHTTVEASIR 293
+++ L ++ + +I+
Sbjct: 555 DVRFRPNSTQLATSSFDKTIK 575
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -1
Query: 535 VSC*RRRIGSVRFCGLELEGQLRVLAGHVDEAKVAVSTVERYQRSELASIRHADRF*ILT 356
VSC R+ V C +G+L AGH + KV + +E Q E HA I+T
Sbjct: 503 VSCIRKSASKVICCSFSYDGKLLASAGH--DKKVFIWNMETLQ-VESTPEEHAH---IIT 556
Query: 355 EIQVYSVDADLPHTTVEASIR 293
+++ L ++ + +I+
Sbjct: 557 DVRFRPNSTQLATSSFDKTIK 577
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -1
Query: 535 VSC*RRRIGSVRFCGLELEGQLRVLAGHVDEAKVAVSTVERYQRSELASIRHADRF*ILT 356
VSC R+ V C +G+L AGH + KV + +E Q E HA I+T
Sbjct: 503 VSCIRKSASKVICCSFSYDGKLLASAGH--DKKVFIWNMETLQ-VESTPEEHAH---IIT 556
Query: 355 EIQVYSVDADLPHTTVEASIR 293
+++ L ++ + +I+
Sbjct: 557 DVRFRPNSTQLATSSFDKTIK 577
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -1
Query: 535 VSC*RRRIGSVRFCGLELEGQLRVLAGHVDEAKVAVSTVERYQRSELASIRHADRF*ILT 356
VSC R+ V C +G+L AGH + KV + +E Q E HA I+T
Sbjct: 503 VSCIRKSASKVICCSFSYDGKLLASAGH--DKKVFIWNMETLQ-VESTPEEHAH---IIT 556
Query: 355 EIQVYSVDADLPHTTVEASIR 293
+++ L ++ + +I+
Sbjct: 557 DVRFRPNSTQLATSSFDKTIK 577
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -1
Query: 535 VSC*RRRIGSVRFCGLELEGQLRVLAGHVDEAKVAVSTVERYQRSELASIRHADRF*ILT 356
VSC R+ V C +G+L AGH + KV + +E Q E HA I+T
Sbjct: 503 VSCIRKSASKVICCSFSYDGKLLASAGH--DKKVFIWNMETLQ-VESTPEEHAH---IIT 556
Query: 355 EIQVYSVDADLPHTTVEASIR 293
+++ L ++ + +I+
Sbjct: 557 DVRFRPNSTQLATSSFDKTIK 577
>At1g55610.1 68414.m06365 protein kinase family protein contains
Prosite:PS00107: Protein kinases ATP-binding region
signature
Length = 1166
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +2
Query: 329 SINGVNLDLSENLESIGMAYGCQFASLVSFNGTDSYLRFVDVTSEN 466
++N VNL NL+++ + G F+S +G+D YL+ +D++S +
Sbjct: 92 TLNLVNLTALPNLQNLYLQ-GNYFSSGGDSSGSDCYLQVLDLSSNS 136
>At1g03430.1 68414.m00323 two-component phosphorelay mediator,
putative strong similarity to ATHP1 [Arabidopsis
thaliana] GI:4156241
Length = 157
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 221 FAQRRHTELRHLNFGGNNKGILQVPDRGFDGCMRQISINGVNLDLSENLE 370
F + +ELR L G + +V FD C + I+ ++L+ +N++
Sbjct: 25 FLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLERPDNVD 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,912,014
Number of Sequences: 28952
Number of extensions: 325446
Number of successful extensions: 828
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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