Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30305
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 85 6e-18
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 59 6e-10
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 59 6e-10
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 58 8e-10
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 56 6e-09
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 52 5e-08
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 48 9e-07
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 39 7e-04
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 28 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 3.0
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 26 5.3
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 9.3
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 25 9.3
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 9.3
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 85.4 bits (202), Expect = 6e-18
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGI 181
E+G D V E+G RV VF+ +R +TIV+RG+T Y+DD+ERAIDDGVN K +
Sbjct: 343 EMGSVDVVETIEIGGDRVTVFRQVEDITRTATIVLRGATKTYLDDLERAIDDGVNIVKAL 402
Query: 182 ARDGRFVPGAGATEIELAQQLL 247
+D R + GAGA++++L +L+
Sbjct: 403 VKDNRLIFGAGASDMQLCIRLI 424
Score = 82.6 bits (195), Expect = 4e-17
Identities = 37/92 (40%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Frame = +1
Query: 241 VIGVCDTLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKA-HKEGQKNAGFD 417
+I V + PG+ Q+A++++ A E +PR +++N+G + T+V++K+Y A HKE ++ G D
Sbjct: 423 LISVGEKTPGIYQHAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVD 482
Query: 418 IDSENNGVCDAKEKGIIDSYLLKFWGIKYAVE 513
++ EN+G DAKE GI D L K I+ A E
Sbjct: 483 VECENDGTLDAKEAGIFDVLLAKKSAIRLATE 514
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 522 TILKVDQIIMAKRAGGPKPRAP 587
T+L VDQ++M+K AGGPKP P
Sbjct: 518 TVLNVDQVVMSKPAGGPKPPGP 539
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 58.8 bits (136), Expect = 6e-10
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +1
Query: 259 TLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNG 438
T+ G +Q + FA +LE IPR L DN+G ++T ++NK+ H +G+ AG D+DSE G
Sbjct: 431 TISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSE--G 488
Query: 439 VCDAKEKGIIDSYLLKFWGIKYAVE 513
V + EK + + +K I A E
Sbjct: 489 VANNFEKFVWEPSTVKSNAILSATE 513
Score = 51.6 bits (118), Expect = 9e-08
Identities = 23/83 (27%), Positives = 47/83 (56%)
Frame = +2
Query: 5 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 184
LG CD ++G R +F+ +++ T+++RG D ++ ++ER++ D + K
Sbjct: 347 LGTCDTFEERQIGGDRFNLFE-GCPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHAL 405
Query: 185 RDGRFVPGAGATEIELAQQLLEF 253
++ V G GA E+EL++ L ++
Sbjct: 406 KNNLVVAGGGACEMELSKYLRDY 428
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 58.8 bits (136), Expect = 6e-10
Identities = 33/93 (35%), Positives = 48/93 (51%)
Frame = +1
Query: 259 TLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNG 438
++ G+ Q+ R A A+E IPR L N GAN + + ++ H EGQ + F ID E
Sbjct: 426 SIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHS--FGIDGETGR 483
Query: 439 VCDAKEKGIIDSYLLKFWGIKYAVEQQQPFLRL 537
V D E G+ + +K IK A+E LR+
Sbjct: 484 VVDMHEYGVWEPEAVKLQSIKTAIESACLLLRV 516
Score = 43.6 bits (98), Expect = 2e-05
Identities = 20/79 (25%), Positives = 42/79 (53%)
Frame = +2
Query: 14 CDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIARDG 193
C ++D++GD F + TI++RG + + ++++ER + D + + +
Sbjct: 345 CGLFYIDKLGD-EYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHP 403
Query: 194 RFVPGAGATEIELAQQLLE 250
+ PG GATE+ ++ +L E
Sbjct: 404 KLSPGGGATEMAVSVRLAE 422
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 58.4 bits (135), Expect = 8e-10
Identities = 32/91 (35%), Positives = 50/91 (54%)
Frame = +1
Query: 265 PGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVC 444
PG + AV FA AL +P LADN+G +++E+V ++ AH +G G D+D +
Sbjct: 425 PGKKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMD--EGEIA 482
Query: 445 DAKEKGIIDSYLLKFWGIKYAVEQQQPFLRL 537
D + KGI+++ LK + E Q LR+
Sbjct: 483 DMRAKGILEALKLKQAVVSSGSEGAQLLLRV 513
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFK-MESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKG 178
+LG+C + +G+ +++ F +E+ E+ TIV+RG+T +D+ ERAI D +
Sbjct: 338 KLGHCKKIEEIIIGEDKMIKFSGVEAGEA--CTIVLRGATHQLLDESERAIHDALAVLSQ 395
Query: 179 IARDGRFVPGAGATEIELAQQLLEFVT 259
+ R G G E+ +A+ + E T
Sbjct: 396 TVAESRVTLGGGCAEMLMAKAVEEAAT 422
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 55.6 bits (128), Expect = 6e-09
Identities = 29/92 (31%), Positives = 49/92 (53%)
Frame = +1
Query: 262 LPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGV 441
L G E +R F+ ALE IP LA+N+G NA +VV ++ H G+K AG ++ V
Sbjct: 431 LEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRHANGEKTAGINV--RKGIV 488
Query: 442 CDAKEKGIIDSYLLKFWGIKYAVEQQQPFLRL 537
+ E+ ++ L+ I+ A E + +++
Sbjct: 489 TNILEENVLQPLLVNISAIQLAAETTKMIMKI 520
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/83 (26%), Positives = 43/83 (51%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGI 181
+LG+ D V ++V F + + +I+ RG+ +++ ER++ D + + +
Sbjct: 344 KLGHADLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCVIRCL 403
Query: 182 ARDGRFVPGAGATEIELAQQLLE 250
+ + G G+ EIE AQ+LLE
Sbjct: 404 VKQRALIAGGGSPEIEAAQRLLE 426
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 52.4 bits (120), Expect = 5e-08
Identities = 27/77 (35%), Positives = 46/77 (59%)
Frame = +1
Query: 256 DTLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENN 435
+ +PG++QY++ FA AL++IP ALA+NSG ++ E + + KA + A ID
Sbjct: 440 EKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAV-KARHVKENKAYLGIDCLQT 498
Query: 436 GVCDAKEKGIIDSYLLK 486
G D +++ +ID + K
Sbjct: 499 GSNDMRKQFVIDPLIGK 515
Score = 46.4 bits (105), Expect = 4e-06
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFKMES-SESRISTIVIRGSTDNYMDDIERAIDDGVNTFKG 178
+LG V G TR + +E + SR T+ +RGS +D+ +RA+ D + +
Sbjct: 354 KLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRN 413
Query: 179 IARDGRFVPGAGATEI 226
+ RD R V G GA EI
Sbjct: 414 LIRDNRVVYGGGAAEI 429
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 48.4 bits (110), Expect = 9e-07
Identities = 27/85 (31%), Positives = 44/85 (51%)
Frame = +2
Query: 5 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 184
LG + V ++ D ++ K + S S IV+RG + +D++ER++ D ++ K
Sbjct: 350 LGSAEEVVQEKFSDDECILVKGTKAYSSAS-IVLRGPNEYSLDEMERSMHDSLSVVKRTL 408
Query: 185 RDGRFVPGAGATEIELAQQLLEFVT 259
G+ VPG GA E L+ L F T
Sbjct: 409 ESGKVVPGGGAVETALSIYLENFAT 433
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 38.7 bits (86), Expect = 7e-04
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +2
Query: 5 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 184
LG+ +V+ +G+ + F + + + +TI+I G + I+ A DG+ K
Sbjct: 343 LGWAGSVYERTLGEEKYT-FVEDVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVKNAV 401
Query: 185 RDGRFVPGAGATEIELAQQL 244
D + GAGA E+ A L
Sbjct: 402 EDNCLIVGAGAFEVACAAHL 421
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 483 EILGNKVCCGAATTILKVDQII 548
E+L NK CCGA T V I+
Sbjct: 4 EVLANKSCCGAVVTAFSVIGIV 25
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 72 SILNTTTRVSPTSSTCTASQYPSS 1
S N+TT SPTSS+ T+S SS
Sbjct: 94 SSTNSTTSASPTSSSLTSSSATSS 117
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 164 NTFKGIARDGRFVPGAGATEIELAQQLLEFVTLCP 268
N G DG F+P + E+ QQ+ F T+CP
Sbjct: 115 NVSSGDGSDGSFLPPISSDEMTRYQQM--FTTVCP 147
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 261 SVTNSNNCCANSISVAPAPGTNLPSLAIPLNV 166
+V SN A+++ +AP P +P+L P+N+
Sbjct: 298 AVFPSNQATASTLQLAPPPVQAIPTLRNPVNL 329
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 497 IPQNFKRY--ESIMPFSFASQTPLFSESISKPAFFCPSL 387
+P +R+ + +P ++ + TP FS S K AF PSL
Sbjct: 434 LPPRLRRFFVDDYVPSAYITLTPTFSFSDIKHAFTKPSL 472
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 528 EWLLLLHSILYSPEF 484
EWLLLL ++SPEF
Sbjct: 479 EWLLLLTRKVFSPEF 493
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 190 ISSNSLECINTIINSPLYIVHVVVSRTSNDNSGNPRF*AFHLEHNNTSVPD 38
+S +E N + + +V RT + GN + LEHNN S+PD
Sbjct: 590 VSEIGIESFNAVPGEGVDVVLRWKERTFHALLGN----SLLLEHNNVSIPD 636
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 448 AKEKGIIDSYLLKFWGIKYAVEQQQ 522
AKE+GI DS+++K Y +E+++
Sbjct: 654 AKEEGITDSWIVKHHETLYELEKEK 678
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,303
Number of Sequences: 5004
Number of extensions: 54722
Number of successful extensions: 191
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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