Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30305
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.7  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 540 QIIMAKRAGGPKPRAPLEVMMSLKYLFA 623
           +I    R+  P PR P+  +  LK LFA
Sbjct: 8   KISKVDRSTSPLPRKPVNPVQELKALFA 35


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 355 WHWHLSY 335
           WHWHL Y
Sbjct: 210 WHWHLVY 216


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 482 KRYESIMPFSFASQTPLFSESISKPAFFCPSLCAL 378
           KR       +FA   P  + +I  P   CP +C L
Sbjct: 207 KRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWICEL 241


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 202 YKSPISSNSLECINT 158
           Y SP+SS SL  +NT
Sbjct: 267 YYSPLSSRSLYYVNT 281


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 64  QDGKLRISDFHYC 102
           QDG ++I+DF  C
Sbjct: 120 QDGHIKIADFGMC 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,017
Number of Sequences: 438
Number of extensions: 3776
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)