Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30305
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 108 3e-24
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 59 2e-09
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 59 2e-09
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 59 2e-09
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 56 2e-08
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 56 3e-08
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 52 4e-07
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 48 4e-06
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 42 3e-04
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 42 3e-04
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 34 0.092
At1g48095.1 68414.m05366 hypothetical protein 30 1.1
At3g42750.1 68416.m04464 hypothetical protein 29 2.0
At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family / di... 29 2.6
At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putati... 29 2.6
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (... 28 6.1
At5g23810.1 68418.m02795 amino acid transporter family protein s... 28 6.1
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 28 6.1
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 27 8.0
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 108 bits (260), Expect = 3e-24
Identities = 47/84 (55%), Positives = 65/84 (77%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGI 181
+LGY D++ V+E+G V + + E + IST+V+RGSTD+ +DD+ERA+DDGVNT+K +
Sbjct: 346 DLGYVDSISVEEIGGVTVTIARNEEGGNSISTVVLRGSTDSILDDLERAVDDGVNTYKAM 405
Query: 182 ARDGRFVPGAGATEIELAQQLLEF 253
RD R VPGA ATEIELAQ+L E+
Sbjct: 406 CRDSRIVPGAAATEIELAQRLKEY 429
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +1
Query: 268 GLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVC- 444
GL++YA+ K+A + E +P+ LADN+G NA E++ +Y H G G D++ G C
Sbjct: 435 GLDKYAITKYAESFEFVPKTLADNAGLNAMEIIAALYTGHGSGNTKLGIDLE---EGACK 491
Query: 445 DAKEKGIIDSYLLKFWGIKYAVEQQQPFLRLIKSLWQREQAGQNQE 582
D E + D + K + +KYA + LR+ + + + G ++
Sbjct: 492 DVSETKVWDLFATKLFALKYASDAACTVLRVDQIIMAKPAGGPRRD 537
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 59.3 bits (137), Expect = 2e-09
Identities = 33/93 (35%), Positives = 45/93 (48%)
Frame = +1
Query: 259 TLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNG 438
T+ G+E++ A A E+IPR LA N G N + + H G+ NA ID
Sbjct: 428 TIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGE-NAWTGIDGNTGA 486
Query: 439 VCDAKEKGIIDSYLLKFWGIKYAVEQQQPFLRL 537
+ D KE I DSY +K K A+E LR+
Sbjct: 487 IADMKESKIWDSYNVKAQTFKTAIEAACMLLRI 519
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/72 (27%), Positives = 45/72 (62%)
Frame = +2
Query: 29 VDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIARDGRFVPG 208
V ++GD F ++ E + T+++RG + ++++++ER + D ++ + I ++ + VPG
Sbjct: 352 VKKIGDD-FFSFIVDCKEPKACTVLLRGPSKDFINEVERNLQDAMSVARNIIKNPKLVPG 410
Query: 209 AGATEIELAQQL 244
GATE+ ++ L
Sbjct: 411 GGATELTVSATL 422
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/99 (32%), Positives = 55/99 (55%)
Frame = +1
Query: 241 VIGVCDTLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDI 420
V D PG+EQYA+R FA AL+S+P ALA+NSG E ++ + K+ + + + I
Sbjct: 353 VDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAV-KSQQIKENIPFYGI 411
Query: 421 DSENNGVCDAKEKGIIDSYLLKFWGIKYAVEQQQPFLRL 537
D + G D +E+ + ++ + K I A + + L++
Sbjct: 412 DCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKI 450
Score = 35.5 bits (78), Expect = 0.030
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFKMES-SESRISTIVIRGSTDNYMDDIERAIDDGVNTFKG 178
+LG V G T+ + +E + S+ T+ IRG +++ +R+I D + +
Sbjct: 272 KLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARN 331
Query: 179 IARDGRFVPGAGATEI 226
+ R+ V G GA EI
Sbjct: 332 LIRNKSIVYGGGAAEI 347
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/99 (32%), Positives = 55/99 (55%)
Frame = +1
Query: 241 VIGVCDTLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDI 420
V D PG+EQYA+R FA AL+S+P ALA+NSG E ++ + K+ + + + I
Sbjct: 429 VDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAV-KSQQIKENIPFYGI 487
Query: 421 DSENNGVCDAKEKGIIDSYLLKFWGIKYAVEQQQPFLRL 537
D + G D +E+ + ++ + K I A + + L++
Sbjct: 488 DCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKI 526
Score = 35.5 bits (78), Expect = 0.030
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFKMES-SESRISTIVIRGSTDNYMDDIERAIDDGVNTFKG 178
+LG V G T+ + +E + S+ T+ IRG +++ +R+I D + +
Sbjct: 348 KLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARN 407
Query: 179 IARDGRFVPGAGATEI 226
+ R+ V G GA EI
Sbjct: 408 LIRNKSIVYGGGAAEI 423
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/92 (31%), Positives = 49/92 (53%)
Frame = +1
Query: 262 LPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGV 441
L G+E Y V+ FA ALE IP LA+N+G N +V ++ H +G+ NAG ++ +
Sbjct: 440 LHGMEGYCVKSFAEALEVIPYTLAENAGLNPIAIVTELRNKHAQGEINAGINV--RKGQI 497
Query: 442 CDAKEKGIIDSYLLKFWGIKYAVEQQQPFLRL 537
+ E+ ++ L+ I A E + L++
Sbjct: 498 TNILEENVVQPLLVSTSAITLATECVRMILKI 529
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/81 (28%), Positives = 44/81 (54%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGI 181
+LG+ D V +GD +++ R +++++RGS +D+ ER++ D + + +
Sbjct: 353 KLGHADLVEEASLGDGKILKITGIKDMGRTTSVLVRGSNQLVLDEAERSLHDALCVVRCL 412
Query: 182 ARDGRFVPGAGATEIELAQQL 244
+ G GA EIEL++QL
Sbjct: 413 VSKRFLIAGGGAPEIELSRQL 433
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 TLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAH-KEGQKNAGFDIDSENN 435
T+ G Q + +A ALE IPR L DN+G +AT+V+NK+ + H + + A + +D
Sbjct: 429 TIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAMQSGEGASYGVDINTG 488
Query: 436 GVCDAKEKGIIDSYLLKFWGIKYAVE 513
G+ D+ + + ++K I A E
Sbjct: 489 GIADSFANFVWEPAVVKINAINAATE 514
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/80 (31%), Positives = 45/80 (56%)
Frame = +2
Query: 5 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 184
LG C+ +VG R +F S R +TIV+RG D ++++ ER++ D + +
Sbjct: 345 LGTCEIFEEKQVGGERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRAV 403
Query: 185 RDGRFVPGAGATEIELAQQL 244
++ VPG GA ++E+++ L
Sbjct: 404 KNSTVVPGGGAIDMEISKYL 423
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/90 (31%), Positives = 51/90 (56%)
Frame = +1
Query: 268 GLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCD 447
G + +A+ F+ AL +IP +ADN+G ++ E+V ++ H NAG D+ + V D
Sbjct: 425 GKKSHAIEAFSRALVAIPTTIADNAGLDSAELVAQLRAEHHTEGCNAGIDVIT--GAVGD 482
Query: 448 AKEKGIIDSYLLKFWGIKYAVEQQQPFLRL 537
+E+GI +++ +K + A E + LR+
Sbjct: 483 MEERGIYEAFKVKQAVLLSATEASEMILRV 512
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/83 (24%), Positives = 45/83 (54%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGI 181
+LG+C + +G+ +++ F + +IV+RG++ + +D+ ER++ D +
Sbjct: 337 KLGHCKLIEEIMIGEDKLIHFS-GCEMGQACSIVLRGASHHVLDEAERSLHDALCVLSQT 395
Query: 182 ARDGRFVPGAGATEIELAQQLLE 250
D R + G G E+ +A+++ E
Sbjct: 396 VNDTRVLLGGGWPEMVMAKEVDE 418
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 48.4 bits (110), Expect = 4e-06
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Frame = +1
Query: 259 TLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNA------GFDI 420
TL EQ A+ +FA AL IP+ LA N+ +ATE+V K+ H Q A +
Sbjct: 432 TLGSREQLAIAEFADALLIIPKVLAVNAAKDATELVAKLRAYHHTAQTKADKKHYSSMGL 491
Query: 421 DSENNGVCDAKEKGIIDSYLLKFWGIKYAVEQQQPFLRLIKSLWQREQAGQNQE 582
D N + + E G+I+ + K I++A E LR+ + + Q +E
Sbjct: 492 DLVNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDESQGEE 545
Score = 47.2 bits (107), Expect = 9e-06
Identities = 26/85 (30%), Positives = 42/85 (49%)
Frame = +2
Query: 5 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 184
LG D V + + D V++ K + S +S +++RG+ D +D++ERA+ D + K
Sbjct: 348 LGSADEVVEERIADDDVILIKGTKTSSAVS-LILRGANDYMLDEMERALHDALCIVKRTL 406
Query: 185 RDGRFVPGAGATEIELAQQLLEFVT 259
V G GA E L+ L T
Sbjct: 407 ESNTVVAGGGAVESALSVYLEHLAT 431
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +1
Query: 259 TLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNG 438
T+ G Q V FA AL +P+ LA+N+G + +V+ + H +G G D+ ++
Sbjct: 432 TVQGRAQLGVEAFANALLVVPKTLAENAGLDTQDVIISLTSEHDKG-NIVGLDL--QDGE 488
Query: 439 VCDAKEKGIIDSYLLK 486
D + GI D+Y +K
Sbjct: 489 PVDPQLAGIFDNYSVK 504
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = +2
Query: 5 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 184
LG+ V+ +G+ + F + TI+I+G D+ + I+ A+ DG+ + K
Sbjct: 347 LGWAGLVYEHVLGEEKYT-FVEQVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTL 405
Query: 185 RDGRFVPGAGATEIELAQQLLEFV 256
D V GAGA E+ Q L+ V
Sbjct: 406 EDECVVLGAGAFEVAARQHLINEV 429
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +2
Query: 5 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 184
LG+ V+ +G+ + F + TI+I+G D+ + I+ A+ DG+ + K
Sbjct: 346 LGWAGLVYEHVLGEEKYT-FVEQVKNPNSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTI 404
Query: 185 RDGRFVPGAGATEIELAQQLLEFV 256
D V GAGA E+ Q LL V
Sbjct: 405 EDECVVLGAGAFEVAARQHLLNEV 428
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +1
Query: 259 TLPGLEQYAVRKFAXALESIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNG 438
T+ G Q V FA AL +P+ LA+N+G + +V+ + H +G G ++ ++
Sbjct: 431 TVQGRAQLGVEAFANALLVVPKTLAENAGLDTQDVIISLTSEHDKGNV-VGLNL--QDGE 487
Query: 439 VCDAKEKGIIDSYLLK 486
D + GI D+Y +K
Sbjct: 488 PIDPQLAGIFDNYSVK 503
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 33.9 bits (74), Expect = 0.092
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 89 ISTIVIRGSTDNYMDDIERAIDDGVNTFKGIARDGRFVPGAGATEIELAQQL 244
++ I + G T+ ++D + I+D N R+G VPG GAT I L ++
Sbjct: 407 VAVIKVGGHTETELEDRKLRIEDAKNATFAAMREG-IVPGGGATYIHLLDEI 457
>At1g48095.1 68414.m05366 hypothetical protein
Length = 303
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 53 VVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFK 175
V KM + ST+V+R S + +DD+E I GV T+K
Sbjct: 245 VASHKMMKLLTPFSTVVLRRSKYSILDDLEGYITSGVYTYK 285
>At3g42750.1 68416.m04464 hypothetical protein
Length = 189
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 400 FVPPCVP-CKFCLQLQWHWHLSYLPKHEVCSQEPLQT 293
F+PP P + L +QW H+S L + SQ P++T
Sbjct: 3 FLPPLTPPTELYLGIQWPNHISILVNYLPVSQTPIET 39
>At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family /
dihydrokaempferol 4-reductase family similar to
dihydroflavonol 4-reductase (Rosa hybrid cultivar,
GI:1332411), CPRD14 protein (Vigna unguiculata,
GI:1854445)
Length = 326
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 2 ELGYCDAVHVDEVGDTRVVVFKMESSESR 88
++GY VH+D+V T +VVF+ E+++ R
Sbjct: 224 QMGY---VHIDDVARTHIVVFEHEAAQGR 249
>At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:871510 from [Pisum
sativum]; contains Pfam profile: PF00071 Ras family
Length = 218
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 337 NSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVEQ 516
N +A++ VNKI +K D+D V +K + + D Y +KF+ Q
Sbjct: 112 NIEQHASDSVNKILVGNKA-------DMDESKRAVPTSKGQALADEYGIKFFETSAKTNQ 164
Query: 517 --QQPFLRLIKSLWQR 558
+Q FL + K + QR
Sbjct: 165 NVEQVFLSIAKDIKQR 180
>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
(IRX5) nearly identical to cellulose synthase
[Arabidopsis thaliana] GI:27462651; contains Pfam
profile PF03552: Cellulose synthase
Length = 1049
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 337 NSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEK 459
++G N +YK HK K AG D ENNG D+ ++
Sbjct: 59 SNGNKCCPQCNTLYKRHKGSPKIAG---DEENNGPDDSDDE 96
>At5g23810.1 68418.m02795 amino acid transporter family protein
similar to amino acid carrier [Ricinus communis]
GI:3293031; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 467
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 420 NIKTSIFLSLLVCLVNFVYNFSGIG 346
N ++LSL+ +++F Y+F GIG
Sbjct: 180 NFHNMVWLSLVAAIMSFTYSFIGIG 204
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 635 YIK*CKQIFKTHHH-FQWRSWFWPACSLC 552
Y K C + + H F W SW P+C +C
Sbjct: 175 YHKNCLKSWAQHRDLFHWSSWSCPSCRVC 203
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 421 QYQNQHFFVPPCVPCKFCLQ-LQWHWHLSYLPKHEVCSQEPLQTSLQHT 278
Q + F + C+ C Q + +H L H VC+ +P+ + + HT
Sbjct: 155 QLYSSPFALVNCICCDISFQDMIYHSSTYKLSMHPVCAMKPVPSFIDHT 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,978,693
Number of Sequences: 28952
Number of extensions: 285143
Number of successful extensions: 873
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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