Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30304
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D90359-1|BAA14374.1| 1872|Homo sapiens CCG1 protein protein.           30   9.1  
AY623109-1|AAT38105.1| 1893|Homo sapiens TAF1 RNA polymerase II,...    30   9.1  
AM711893-1|CAM98556.1|  491|Homo sapiens dystonia 3 (with Parkin...    30   9.1  
AJ555148-1|CAD87527.2|  457|Homo sapiens putative DYT3 protein p...    30   9.1  
AJ549250-1|CAD70493.3|  455|Homo sapiens putative DYT3 protein p...    30   9.1  
AJ549249-1|CAD70492.2|  335|Homo sapiens putative DYT3 protein p...    30   9.1  
AJ549248-1|CAD70491.3|  489|Homo sapiens putative DYT3 protein p...    30   9.1  
AF390562-1|AAN40840.1| 1826|Homo sapiens TBP-associated factor R...    30   9.1  
AB209316-1|BAD92553.1| 1070|Homo sapiens TBP-associated factor 1...    30   9.1  

>D90359-1|BAA14374.1| 1872|Homo sapiens CCG1 protein protein.
          Length = 1872

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 165  ITKHQSPMHCTFITRYNEIMLNYIKLNGPE*N*TKCHERI 46
            I+KH+     +F+   N I+ N +K NGPE   TK  + I
Sbjct: 1557 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 1596


>AY623109-1|AAT38105.1| 1893|Homo sapiens TAF1 RNA polymerase II, TATA
            box binding protein (TBP)-associated factor, 250kD
            protein.
          Length = 1893

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 165  ITKHQSPMHCTFITRYNEIMLNYIKLNGPE*N*TKCHERI 46
            I+KH+     +F+   N I+ N +K NGPE   TK  + I
Sbjct: 1578 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 1617


>AM711893-1|CAM98556.1|  491|Homo sapiens dystonia 3 (with
           Parkinsonism) protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 165 ITKHQSPMHCTFITRYNEIMLNYIKLNGPE*N*TKCHERI 46
           I+KH+     +F+   N I+ N +K NGPE   TK  + I
Sbjct: 211 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 250


>AJ555148-1|CAD87527.2|  457|Homo sapiens putative DYT3 protein
           protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 165 ITKHQSPMHCTFITRYNEIMLNYIKLNGPE*N*TKCHERI 46
           I+KH+     +F+   N I+ N +K NGPE   TK  + I
Sbjct: 211 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 250


>AJ549250-1|CAD70493.3|  455|Homo sapiens putative DYT3 protein
           protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 165 ITKHQSPMHCTFITRYNEIMLNYIKLNGPE*N*TKCHERI 46
           I+KH+     +F+   N I+ N +K NGPE   TK  + I
Sbjct: 211 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 250


>AJ549249-1|CAD70492.2|  335|Homo sapiens putative DYT3 protein
           protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 165 ITKHQSPMHCTFITRYNEIMLNYIKLNGPE*N*TKCHERI 46
           I+KH+     +F+   N I+ N +K NGPE   TK  + I
Sbjct: 60  ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 99


>AJ549248-1|CAD70491.3|  489|Homo sapiens putative DYT3 protein
           protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 165 ITKHQSPMHCTFITRYNEIMLNYIKLNGPE*N*TKCHERI 46
           I+KH+     +F+   N I+ N +K NGPE   TK  + I
Sbjct: 211 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 250


>AF390562-1|AAN40840.1| 1826|Homo sapiens TBP-associated factor RNA
            polymerase 1-like protein.
          Length = 1826

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 165  ITKHQSPMHCTFITRYNEIMLNYIKLNGPE*N*TKCHERI 46
            I+KH+     +F+   N I+ N +K NGPE   TK  + I
Sbjct: 1576 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 1615


>AB209316-1|BAD92553.1| 1070|Homo sapiens TBP-associated factor 1
           isoform 2 variant protein.
          Length = 1070

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 165 ITKHQSPMHCTFITRYNEIMLNYIKLNGPE*N*TKCHERI 46
           I+KH+     +F+   N I+ N +K NGPE   TK  + I
Sbjct: 721 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 760


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,278,784
Number of Sequences: 237096
Number of extensions: 1551836
Number of successful extensions: 1686
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)