Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30304
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    28   5.5  
AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine re...    27   9.7  

>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 104 NMISLYLVINVQCMGDWCLVMVTVTNLLAKRGCYSSFRLCT 226
           N   +YL +   C  DW  V+V + N+LA   C S   +CT
Sbjct: 213 NKNRVYLFLQ-SCFQDWIAVLVILNNILASMYCRS--HVCT 250


>AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein134 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 127 NKCAVHGRLVFSYGNCDQFAGQKGLLFEF*IMYCSLLNH*CYVICICVLF 276
           +KC+ HG L++++   D F    GLL +      ++++H    I  C++F
Sbjct: 192 SKCSSHGVLMYAFTISDLFLLNDGLLLKVSTFTAAIVSH----IIPCIIF 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,899,701
Number of Sequences: 27780
Number of extensions: 268402
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)