Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30303
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.2  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   9.5  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   9.5  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   9.5  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 457 KTKELVLSKYLILILVVVYFKSLQ 386
           K   +V+  +LIL  V++YF SL+
Sbjct: 40  KNCTIVIIFHLILFAVLLYFASLE 63


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 3   IKILNLHKFNLPQYNFEIYMYCKRNKC 83
           IK L   K NL Q  + IYM+    KC
Sbjct: 281 IKKLGKIKENLEQSRYFIYMFVSVWKC 307


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 3   IKILNLHKFNLPQYNFEIYMYCKRNKC 83
           IK L   K NL Q  + IYM+    KC
Sbjct: 281 IKKLGKIKENLEQSRYFIYMFVSVWKC 307


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 3   IKILNLHKFNLPQYNFEIYMYCKRNKC 83
           IK L   K NL Q  + IYM+    KC
Sbjct: 281 IKKLGKIKENLEQSRYFIYMFVSVWKC 307


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 3   IKILNLHKFNLPQYNFEIYMYCKRNKC 83
           IK L   K NL Q  + IYM+    KC
Sbjct: 281 IKKLGKIKENLEQSRYFIYMFVSVWKC 307


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 24  KFNLPQYNFEIYMYCKRNKC 83
           K NLP+   +++   +R KC
Sbjct: 163 KINLPESRVQVWFKNRRAKC 182


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 24  KFNLPQYNFEIYMYCKRNKC 83
           K NLP+   +++   +R KC
Sbjct: 105 KINLPESRVQVWFKNRRAKC 124


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 243 CKFCNGSFKNVLFYIQ 290
           CK  NG +KN L  ++
Sbjct: 206 CKLNNGHYKNFLSQVE 221


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 321 YFLCMYTVHFFVYKI 277
           YF+ ++TV++  Y +
Sbjct: 149 YFIYLFTVYYIYYSV 163


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 243 CKFCNGSFKNVLFYIQ 290
           CK  NG +KN L  ++
Sbjct: 31  CKLNNGHYKNFLSQVE 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,107
Number of Sequences: 336
Number of extensions: 2608
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)