Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30303
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   3.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.8  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    25   9.8  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 404 ILQKPPKMSQILREKKNVFKNHNLIQICTSYVCTLYIFLYI 282
           I +K  ++S   R+ ++V    N + + T  VC L +FL++
Sbjct: 335 IYRKSLRLSSAARQSRSVGDIVNYMSVDTQKVCDLTMFLFV 375


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 49   KLYWGRLNLCK 17
            KL+WGRLN+ K
Sbjct: 1333 KLFWGRLNMAK 1343


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 256 LQNLQFEK*NQEAFMTTIEKIGLVKMAGLFIEDKSVLNSVIFRYNY 119
           LQ ++F+K  ++A   TIE   L  +AG+ +     +  VI   NY
Sbjct: 129 LQGIRFDKGIKKAHKLTIEDTQLSTLAGISLNTTDTM--VIVNNNY 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,613
Number of Sequences: 5004
Number of extensions: 40348
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)