Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30303
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z81453-7|CAB03797.2|  457|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF264764-1|AAQ14296.1|  457|Caenorhabditis elegans sterol reduct...    28   3.9  
U61946-4|AAC24394.1|  337|Caenorhabditis elegans Serpentine rece...    28   5.1  
AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.6 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 126 YLKITELSTDLSSINNPAIFTNPIFSIVVIKAS*FYFSNCKFCNG 260
           YL +T   TDLS  +   + + PI+ + +I  S  +FS C F NG
Sbjct: 115 YLSVTS-PTDLSRFS---VKSTPIWILFIISISFLWFSMCYFVNG 155


>Z81453-7|CAB03797.2|  457|Caenorhabditis elegans Hypothetical
           protein B0250.9 protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 PAIFTNPIFSIVVIKAS*FYFSNCKFCNGSFKNVLF 281
           P I+T+P+  +V    S    SNC FC  +  +++F
Sbjct: 297 PIIYTSPVTILVATNRSVGVISNCLFCAVAIGSMVF 332


>AF264764-1|AAQ14296.1|  457|Caenorhabditis elegans sterol reductase
           protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 PAIFTNPIFSIVVIKAS*FYFSNCKFCNGSFKNVLF 281
           P I+T+P+  +V    S    SNC FC  +  +++F
Sbjct: 297 PIIYTSPVTILVATNRSVGVISNCLFCAVAIGSMVF 332


>U61946-4|AAC24394.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein223 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 439 IRVPWFFFFRTIEEYTFSHKYY 504
           + +P+F  F  I  YTFS+ YY
Sbjct: 252 LAIPFFIIFIPISYYTFSNSYY 273


>AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical
           protein Y113G7A.11 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  NLHKFNLPQYNFEIYMYCKRN 77
           + H +N+P+Y    Y+YC RN
Sbjct: 150 HFHHYNIPKYPDTKYIYCVRN 170


>Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical
           protein T13H10.2 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 375 NIKRKKKCI*KSQFNTDLYFLCMYTVHFFVYKI 277
           NI+  +KC      +T  YFLC+   +FFV+ I
Sbjct: 26  NIRYHEKCF-SIPLHTLNYFLCVIIFYFFVFTI 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,467,603
Number of Sequences: 27780
Number of extensions: 217409
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)