Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30303
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    26   0.22 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 240 NCKFCNGSFKNVLFYIQKNVQCTYIRS 320
           N  F N   K+ + +IQKN+QC  + S
Sbjct: 124 NGYFLNSESKDFIDFIQKNLQCCGVHS 150


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 325 FVLLMYVHCTFFCI*NNTFLKDPLQNL 245
           F+LL  +H   +    NT + D L+N+
Sbjct: 11  FILLQMIHLIAWASLENTGISDRLENV 37


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 475 EEYTFSHKYYYCMLIKNGCMRHNE 546
           EEY + H  Y CM    G   H +
Sbjct: 474 EEYEYVHDEYTCMDCGPGKWPHED 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,439
Number of Sequences: 438
Number of extensions: 2862
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)