Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30303
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55630.1 68414.m06368 pentatricopeptide (PPR) repeat-containi...    29   1.6  
At4g36120.1 68417.m05141 expressed protein                             28   4.8  
At4g05440.1 68417.m00826 temperature sensing protein-related con...    27   6.3  
At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyc...    27   6.3  
At4g03670.1 68417.m00502 hypothetical protein                          27   8.3  

>At1g55630.1 68414.m06368 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 477

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 201 SIVVIKAS*FYFSNCKFCNGS 263
           S+ V KAS F F++ KFCNGS
Sbjct: 10  SVAVRKASRFLFTSRKFCNGS 30


>At4g36120.1 68417.m05141 expressed protein
          Length = 981

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 371 LREKKNVFKNHNLIQICTSYVCTLYIFL 288
           L+EK   +KNHNL++  T + C   I L
Sbjct: 855 LQEKMQRYKNHNLLRSSTMHTCQETIHL 882


>At4g05440.1 68417.m00826 temperature sensing protein-related
           contains weak similarity to D123 (GI:1236114) [Rattus
           norvegicus]
          Length = 333

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 347 KNHNLIQICTSYVCTLYIFLYIK*HIFKGSVTEFTI*KVKSRGFYDNY 204
           K++ L+ IC   V T Y  L  +  + KG + EF   K++     +NY
Sbjct: 188 KSNELVGICQREVTTFYPVLLNEKDLLKGLIEEFFDDKIRFEFESENY 235


>At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyclin
           a2-type [Glycine max] GI:857397, cyclin A-like protein
           [Nicotiana tabacum] GI:1064927; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 460

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 428 LNSYISRRILQKPPKMSQILREKKNVFKNHNLIQICTSYVCTLY 297
           +++Y SR +L    KM +   +  N+  N+   Q+C ++ C +Y
Sbjct: 158 IDNYCSRDVLSDMKKMDK--NQIVNIDSNNGDPQLCATFACDIY 199


>At4g03670.1 68417.m00502 hypothetical protein
          Length = 171

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 395 KPPKMSQILR-EKKNVFKNHNLIQICTSYVCTLYIFLY 285
           K P++SQ L  E KN +   +L  + T Y C L++ L+
Sbjct: 92  KNPRLSQFLEFELKNTW-GQSLTCVATGYTCDLFVRLW 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,234,178
Number of Sequences: 28952
Number of extensions: 180438
Number of successful extensions: 412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)