Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30302
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    52   5e-08
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   6.0  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   7.9  

>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
 Frame = +3

Query: 3   QFLCPPDKIGVNRAEGSLERARGLNPMVXVTSHTKGVDELPDSFFTEFDVVCATGLKQEQ 182
           QF      IG  RA    ++   LNP+V + + T  + E+ +   ++F +V AT L  E+
Sbjct: 74  QFFIEASDIGQLRANVFKKKLHELNPLVEIDTDTSLISEIDEGKISKFSMVIATQLDYEE 133

Query: 183 FERINNACRDSNKKFICGDVWGTY--ATCSLI*LITSTPRRLYNTK 314
           F RIN   R  N  F     +G Y  A C LI    +  R + NTK
Sbjct: 134 FCRINELTRICNASFYATSCFGLYGFAFCDLINHNFAIDRVVDNTK 179


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 195 NNACRDSNKKFICGDVWGTYATCSLI*LITSTPRRLYNTKPPNAGPMMKK 344
           N A  D    F+CG   G +AT +   L T   +     K P+  P  KK
Sbjct: 98  NLAMNDHAVNFLCGTSAGIFATLTSYPLDTMRTKFASYAKTPHMLPATKK 147


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 235 PQINFLLLSRQALLIRSNCSCLRPVAHT 152
           P  NFL   RQ  LI  NC CL   A+T
Sbjct: 330 PYFNFL---RQKKLIPINCECLNIKAYT 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,462
Number of Sequences: 5004
Number of extensions: 36500
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)