Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30302
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0388 + 17076157-17076254,17076762-17076813,17077672-170778...    33   0.22 
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006...    31   0.50 
11_01_0636 - 5095754-5095974,5097188-5097254,5097467-5098363           29   3.5  
11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960           29   3.5  
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    28   4.6  
03_04_0015 + 16453138-16453356,16453446-16453970                       28   6.1  

>11_04_0388 +
           17076157-17076254,17076762-17076813,17077672-17077867,
           17078242-17078321,17078465-17078581,17078895-17078950,
           17079238-17079268,17079292-17079342,17080411-17080477,
           17080621-17080724,17080802-17080909,17081874-17081987
          Length = 357

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +3

Query: 6   FLCPPDKI---GVNRAEGSLERARGLNPMVXVTSHTKGVDELPD-SFFTEFDVVCATGLK 173
           FL P D+    G +RAE   E  +  NPMV V    KG   L D  F  +FD++  +   
Sbjct: 80  FLIPHDESIYGGRSRAEVCCESLKDFNPMVRVAVE-KGDPSLIDGEFLDKFDIIVVSCAP 138

Query: 174 QEQFERINNACRDSNK 221
            +    IN+ CR  +K
Sbjct: 139 IKTKLLINDNCRKRSK 154


>03_06_0476 +
           34199577-34199638,34200267-34200397,34200535-34200698,
           34201007-34201117,34201308-34201387,34201489-34201639,
           34201736-34201829,34202421-34202509,34203672-34203745,
           34203859-34204021,34204445-34204530,34205011-34205094,
           34205186-34205366,34205837-34205887
          Length = 506

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 111 VDELPDSFFTEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWG 248
           +D  P SFF++F VV AT L +    ++++ CR +N   +    +G
Sbjct: 102 IDTNP-SFFSQFTVVIATQLPERSLLKLDDICRKANIVLVAARSYG 146


>11_01_0636 - 5095754-5095974,5097188-5097254,5097467-5098363
          Length = 394

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 461 GDCGYLL*SSCYAFRDNITGILTRLEEKTT 550
           GDCG+    SCY  +DN   +L  L E  T
Sbjct: 261 GDCGHENCESCYGIKDNNCVLLEGLSEAKT 290


>11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960
          Length = 376

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 461 GDCGYLL*SSCYAFRDNITGILTRLEEKTT 550
           GDCG+    SCY  +DN   +L  L E  T
Sbjct: 256 GDCGHENCESCYGIKDNNCVLLEGLSEAKT 285


>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
            2602637-2602810,2603032-2603098,2603735-2603757,
            2603899-2604001,2604087-2604848,2605098-2605292,
            2605496-2606115,2606429-2606480,2606558-2607197,
            2608366-2608574,2608660-2609189,2609500-2609566,
            2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 138  TEFDVVCATGLKQEQFERINNACRDSNKK 224
            +E DV C+TG+  E+   + + CRDS+ K
Sbjct: 1204 SEPDVSCSTGVVSEESLPVCSLCRDSDSK 1232


>03_04_0015 + 16453138-16453356,16453446-16453970
          Length = 247

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 278 QLDQRTCSVRTPDVAADKLFVAVATSIVDSFELLLFETCCTYDVKFRE 135
           +L +R  +V +PD AA+  F+A+  + VD F     E    + ++ RE
Sbjct: 27  ELKRRLNAVSSPDPAAEARFLALLHAEVDKFNAFFLEQEEDFVIRQRE 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,290,962
Number of Sequences: 37544
Number of extensions: 234204
Number of successful extensions: 583
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)