Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30302
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   8e-15
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.51 
SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)                      27   8.3  

>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 36/84 (42%), Positives = 48/84 (57%)
 Frame = +3

Query: 3   QFLCPPDKIGVNRAEGSLERARGLNPMVXVTSHTKGVDELPDSFFTEFDVVCATGLKQEQ 182
           QFL P + +G NRAE SL R + LNPMV V++    +    D+F  +FDVV ATG   + 
Sbjct: 15  QFLAPREALGKNRAEASLARTQALNPMVAVSADKNNITAKADTFLDDFDVVVATGCSSDI 74

Query: 183 FERINNACRDSNKKFICGDVWGTY 254
              ++  CR  N KF   DV+G Y
Sbjct: 75  LANLDERCRAKNIKFFASDVFGFY 98


>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 594

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 99  HTKGVDELPDSFFTEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWGTY 254
           HT+GVDE   SF  E   +C  GL+ +   R +      NK F+C +   T+
Sbjct: 429 HTQGVDE--KSFVCE---ICGKGLRTKSSLRDHRKTHTDNKPFVCEECGKTF 475


>SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)
          Length = 792

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 93  TSHTKGVDELPDSFFTEFDVVCATGLK 173
           T  TKG+   PD     FDV+ A GLK
Sbjct: 637 TLSTKGLTARPDQVCLNFDVIRACGLK 663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,524,731
Number of Sequences: 59808
Number of extensions: 283123
Number of successful extensions: 1469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)