Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30302
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    36   0.027
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    36   0.027
Z72502-6|CAA96591.1|  343|Caenorhabditis elegans Hypothetical pr...    32   0.34 
U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula (ubiq...    30   1.0  
X51321-1|CAA35704.1|  422|Caenorhabditis elegans hypothetical pr...    27   9.5  
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +3

Query: 27  IGVNRAEGSLERARGLNPMVXVTSHTKGVDELPDSFFTEFDVVCATGLKQEQFERINNAC 206
           +G NRA    ER   LN  V V   T   DEL + F   FD+V  T   +    +I    
Sbjct: 91  VGHNRATSCYERLAELNDSVNVQVST---DELTEEFVKTFDLVVLTDAARTAQRQIAAWT 147

Query: 207 RDSNKKFICGDVWGTYA 257
           R  N++ +  D  G ++
Sbjct: 148 RAHNRRILITDARGVFS 164


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +3

Query: 27  IGVNRAEGSLERARGLNPMVXVTSHTKGVDELPDSFFTEFDVVCATGLKQEQFERINNAC 206
           +G NRA    ER   LN  V V   T   DEL + F   FD+V  T   +    +I    
Sbjct: 176 VGHNRATSCYERLAELNDSVNVQVST---DELTEEFVKTFDLVVLTDAARTAQRQIAAWT 232

Query: 207 RDSNKKFICGDVWGTYA 257
           R  N++ +  D  G ++
Sbjct: 233 RAHNRRILITDARGVFS 249


>Z72502-6|CAA96591.1|  343|Caenorhabditis elegans Hypothetical
           protein C08B6.9 protein.
          Length = 343

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 126 DSFFTEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWG 248
           + + T+F +V       E+  ++NN CR  + +FI G ++G
Sbjct: 118 EEYLTKFTLVVVLDESYERTAKVNNICRKHHIRFISGAIYG 158


>U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula
           (ubiquitin activating)homolog protein 1 protein.
          Length = 541

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +3

Query: 6   FLCPPDKIGVNRAEGSLERARGLNPMVXVTSHTKGVDEL---PDSFFTEFDVVCATGLKQ 176
           F    D IG +RAE +LE+   LNP V  ++ ++    L        T F VV A    +
Sbjct: 71  FFLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPTALAMEDVEKLTTFSVVVAANQNE 130

Query: 177 EQFERINNACRDSNKKFICGDVWGTYAT 260
           E          +    FIC   +G   T
Sbjct: 131 EIDTTFAKVLYNIRVPFICIKTFGLIGT 158


>X51321-1|CAA35704.1|  422|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 93  TSHTKGVDELPDSFFTEFDVVCATGLKQEQFE 188
           T+ TK      D  FT+F VV   GLK  QFE
Sbjct: 5   TAVTKKPSTEEDLSFTKFKVVPDVGLKSSQFE 36


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 227 KLFVAVATSIVDSFELLLFETCCTYDVKFREEAVR*LIYALS 102
           KLFV V  +  D F   LF +   YD+K R++    + + ++
Sbjct: 258 KLFVKVEKAAADPFFEPLFASMAIYDIKNRQKVTESMYFNIA 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,472,070
Number of Sequences: 27780
Number of extensions: 210266
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)