Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30298
         (426 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.2  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   2.2  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   2.2  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   2.2  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    21   5.0  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    20   8.7  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 108 LYCCCQIPQIGIRKSRNIKLKFIYY 182
           +Y CC  P + +  +  I+ + +YY
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYY 214


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 108 LYCCCQIPQIGIRKSRNIKLKFIYY 182
           +Y CC  P + +  +  I+ + +YY
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYY 214


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 108 LYCCCQIPQIGIRKSRNIKLKFIYY 182
           +Y CC  P + +  +  I+ + +YY
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYY 214


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 108 LYCCCQIPQIGIRKSRNIKLKFIYY 182
           +Y CC  P + +  +  I+ + +YY
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYY 214


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 108 LYCCCQIPQIGIRKSRNIKLKFIYY 182
           +Y CC  P + +  +  I+ + +YY
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYY 214


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 275 YDRYNSLINDWADLSFQII*TLV 343
           Y+R++ L+N   +L F ++ TL+
Sbjct: 107 YERFDILLNKSKNLQFPLLSTLI 129


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 275 YDRYNSLINDWADLSFQII*TLV 343
           Y+R++ L+N   +L F ++ TL+
Sbjct: 107 YERFDILLNKSKNLQFPLLSTLI 129


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 275 YDRYNSLINDWADLSFQII*TLV 343
           Y+R++ L+N   +L F ++ TL+
Sbjct: 107 YERFDILLNKSKNLQFPLLSTLI 129


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 111 TNSYKLQKKVASQLHFAVTNNNTLI 37
           T  YKL+K    QLH    + N +I
Sbjct: 76  TTGYKLRKGTILQLHIYDLHYNPVI 100


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 81  QLFFVIYSYLYCCCQI 128
           QLF  I++YL   C +
Sbjct: 134 QLFLYIFTYLSVTCYV 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,290
Number of Sequences: 336
Number of extensions: 1517
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)