Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30298
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)        28   2.8  
SB_54061| Best HMM Match : Neur_chan_memb (HMM E-Value=2.3e-32)        27   6.5  
SB_16396| Best HMM Match : 7tm_1 (HMM E-Value=0.017)                   27   8.6  

>SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)
          Length = 490

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 78  KQLFFVIYSYLYCCCQIPQIGIRKSRNIKLKFIYYVHVYYV 200
           K +  V+Y +L    Q    G+R S N+KL  + YV + ++
Sbjct: 426 KYMHSVVYGFLVSSPQEVGTGLRISVNVKLPHLLYVRLLFI 466


>SB_54061| Best HMM Match : Neur_chan_memb (HMM E-Value=2.3e-32)
          Length = 363

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 111 YCCCQIPQIGIRKSRNIKLKFIYYVH 188
           Y CC+ P I +  + NI+ K ++Y++
Sbjct: 90  YSCCKHPYIDVTYTINIRRKVLFYLN 115


>SB_16396| Best HMM Match : 7tm_1 (HMM E-Value=0.017)
          Length = 274

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 15  NMNNI*DKSMYYYLLQQSVIEKQLFFVIYSYLYCCC 122
           N N+  +  +Y Y + +    +Q   VI +Y+YCCC
Sbjct: 156 NANSFINVVVYSYKIPE--FRQQFNAVISNYVYCCC 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,900,723
Number of Sequences: 59808
Number of extensions: 134961
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)