Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30298
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   2.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 33  DKSMYYYLLQQSVIEKQLFFVIYSYLYCCCQIPQIGIRKSRNIKLKFIYY 182
           D S +Y  ++  ++E     V     Y CC  P + I  +  ++ K ++Y
Sbjct: 200 DLSEFYMSVEWDILEVPA--VRNEKFYTCCDEPYLDITFNITMRRKTLFY 247


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 33  DKSMYYYLLQQSVIEKQLFFVIYSYLYCCCQIPQIGIRKSRNIKLKFIYY 182
           D S +Y  ++  ++E     V     Y CC  P + I  +  ++ K ++Y
Sbjct: 200 DLSEFYMSVEWDILEVPA--VRNEKFYTCCDEPYLDITFNITMRRKTLFY 247


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   HFHNNMNNI*DKSMYY 50
           H +NN NN  +K +YY
Sbjct: 313 HNNNNYNNYNNKKLYY 328


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 33  DKSMYYYLLQQSVIEKQLFFVIYSYLYCCCQIPQIGIRKSRNIKLKFIYY 182
           D S +Y  ++  ++E     V     Y CC  P + I  +  ++ K ++Y
Sbjct: 196 DLSEFYTSVEWDILEVPA--VRNEKFYTCCDEPYLDITFNITMRRKTLFY 243


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 111 YCCCQIPQIGIRKSRNIKLKFIYY 182
           Y CC  P + +  +  I+ + +YY
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 111 YCCCQIPQIGIRKSRNIKLKFIYY 182
           Y CC  P + +  +  I+ + +YY
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 111 YCCCQIPQIGIRKSRNIKLKFIYY 182
           Y CC  P + +  +  I+ + +YY
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 111 YCCCQIPQIGIRKSRNIKLKFIYY 182
           Y CC  P + +  +  I+ + +YY
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 111 YCCCQIPQIGIRKSRNIKLKFIYY 182
           Y CC  P + +  +  I+ + +YY
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYY 197


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 111 YCCCQIPQIGIRKSRNIKLKFIYY 182
           Y CC  P + +  +  I+ + +YY
Sbjct: 174 YQCCPEPYVDVTFTIQIRRRTLYY 197


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 111 YCCCQIPQIGIRKSRNIKLKFIYY 182
           Y CC  P + +  +  I+ + +YY
Sbjct: 242 YQCCPEPYVDVTFTIQIRRRTLYY 265


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 111 YCCCQIPQIGIRKSRNIKLKFIYY 182
           Y CC  P + +  +  I+ + +YY
Sbjct: 242 YQCCPEPYVDVTFTIQIRRRTLYY 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,680
Number of Sequences: 438
Number of extensions: 1864
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)