Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30297
         (601 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   1e-04
UniRef50_Q3JRA6 Cluster: Putative uncharacterized protein; n=2; ...    33   5.1  
UniRef50_Q8KBE5 Cluster: Putative uncharacterized protein; n=1; ...    32   9.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +1

Query: 412 FLLLRWVDELTAHLVLSG*WSP 477
           FLLLRWVDELTAHLVLSG WSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q3JRA6 Cluster: Putative uncharacterized protein; n=2;
           Burkholderia pseudomallei|Rep: Putative uncharacterized
           protein - Burkholderia pseudomallei (strain 1710b)
          Length = 696

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +2

Query: 38  HRVLRLGLAEQISLRLRLRLFTGRP 112
           HRVL+L L  QI LRLRLR   G+P
Sbjct: 30  HRVLQLQLRRQIRLRLRLRPVRGKP 54


>UniRef50_Q8KBE5 Cluster: Putative uncharacterized protein; n=1;
           Chlorobaculum tepidum|Rep: Putative uncharacterized
           protein - Chlorobium tepidum
          Length = 103

 Score = 32.3 bits (70), Expect = 9.0
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 568 AVKGRAAVVTILETLELISQVGGAFTS--WMSMGSTNHLTPG 449
           A  G+A VVT+ E +E+IS V   + S  W++   +N   PG
Sbjct: 39  AGSGKAEVVTVAEAVEIISAVSSPYLSPRWLAANISNATRPG 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,281,887
Number of Sequences: 1657284
Number of extensions: 11568374
Number of successful extensions: 23190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23189
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)