Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30297
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.8  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   8.5  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   8.5  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 134 KNMVAYNRPTVRTLLFGTCIYALYLENVVSEIQASVN----YLACMMATRHNSMLGSILE 301
           +N++     +V  LL    ++  Y+  V S I  S++    Y  C++     S+LGS++E
Sbjct: 312 ENLIDLELKSVSQLLIDEVLHPFYIFQVFSIILWSMDSYYYYAICILIISVVSILGSLIE 371

Query: 302 T 304
           T
Sbjct: 372 T 372


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 527 LRTYISSGWRIYVVDVYGLH 468
           +  + ++GWR YV + +G+H
Sbjct: 619 VEVWATNGWRRYVHEAFGMH 638


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 598 YHRPAYFYREAVKGRAAVVTILETLELIS 512
           YH    + R A   + +VV ILE LE+++
Sbjct: 220 YHNGHVYSRGAADDKNSVVAILEALEILA 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,908
Number of Sequences: 5004
Number of extensions: 48225
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)