Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30297
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0158 - 1186903-1187013,1187108-1187197,1187504-1187590,118...    32   0.40 
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898...    28   5.0  
01_06_0355 + 28657833-28660665,28660762-28661126                       28   6.6  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    27   8.7  

>06_01_0158 -
           1186903-1187013,1187108-1187197,1187504-1187590,
           1187668-1187839,1187917-1188647,1188789-1188861,
           1189295-1189380,1189455-1189529,1189610-1189643,
           1190331-1190622,1191073-1191439
          Length = 705

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 23  PDGTPHRV-LRLGLAEQISLRLRLRLFTGRPSAL*HLTKNMVAYNRPTVRTLLFGTCIYA 199
           P   P R+ LRL L+   S RLRLRL   R +      K MVA    TV  LL  T I  
Sbjct: 183 PPPNPRRLRLRLRLSPPASRRLRLRLRLPRAACAAARRKTMVAPKMVTVNELLGLTQIRG 242

Query: 200 LYLENVVSEI 229
            Y+E  +S +
Sbjct: 243 -YVEKELSNL 251


>06_01_1096 -
           8988463-8989167,8989335-8989361,8989560-8989648,
           8989830-8990039,8990877-8991047,8991595-8991777,
           8991886-8991969,8992067-8992178
          Length = 526

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 239 QMPESRLRHFQDKAHIYKFRTTTFGPSVYYKQPC 138
           Q PE ++ H Q   H+ + R  + GP  +Y+Q C
Sbjct: 436 QQPEQQMYHQQ---HLQQHRQYSAGPQTFYEQSC 466


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 431 WTSSQPT--WC*VVSGAHRHPRRKCATHL 511
           WT++ P   W  V  G HRHP R  A  L
Sbjct: 56  WTAAAPYCGWLGVTCGGHRHPLRVTALEL 84


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 29  GTPHRVLRLGLAEQI-SLRLRLRLFTG 106
           G  HR++R+GL+E++ SLR RL    G
Sbjct: 751 GGVHRIVRVGLSERLASLRTRLAALAG 777


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,988,624
Number of Sequences: 37544
Number of extensions: 327846
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)