Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30297
         (601 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126110-1|AAI26111.1|  804|Homo sapiens TSR1, 20S rRNA accumula...    30   5.4  
BC110851-1|AAI10852.1|  804|Homo sapiens TSR1, 20S rRNA accumula...    30   5.4  
BC019090-1|AAH19090.2|  759|Homo sapiens TSR1 protein protein.         30   5.4  
AB037822-1|BAA92639.1|  853|Homo sapiens KIAA1401 protein protein.     30   5.4  

>BC126110-1|AAI26111.1|  804|Homo sapiens TSR1, 20S rRNA
           accumulation, homolog (S. cerevisiae) protein.
          Length = 804

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 14  LGRPDGTPHRVLRLGLAEQISLRLRLRLFTGRPSAL*HLTK 136
           LG  DG PH+VL + L  +ISL   ++L   R +   HL +
Sbjct: 75  LGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNE 115


>BC110851-1|AAI10852.1|  804|Homo sapiens TSR1, 20S rRNA
           accumulation, homolog (S. cerevisiae) protein.
          Length = 804

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 14  LGRPDGTPHRVLRLGLAEQISLRLRLRLFTGRPSAL*HLTK 136
           LG  DG PH+VL + L  +ISL   ++L   R +   HL +
Sbjct: 75  LGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNE 115


>BC019090-1|AAH19090.2|  759|Homo sapiens TSR1 protein protein.
          Length = 759

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 14  LGRPDGTPHRVLRLGLAEQISLRLRLRLFTGRPSAL*HLTK 136
           LG  DG PH+VL + L  +ISL   ++L   R +   HL +
Sbjct: 30  LGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNE 70


>AB037822-1|BAA92639.1|  853|Homo sapiens KIAA1401 protein protein.
          Length = 853

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 14  LGRPDGTPHRVLRLGLAEQISLRLRLRLFTGRPSAL*HLTK 136
           LG  DG PH+VL + L  +ISL   ++L   R +   HL +
Sbjct: 124 LGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNE 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,082,262
Number of Sequences: 237096
Number of extensions: 1812476
Number of successful extensions: 3145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3145
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)