Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30297
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical pr...    29   3.3  
L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein pr...    29   3.3  
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical
           protein F01D4.6a protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 174 CCSELVYMRFILKMS*ARFRHLSII*RV*WLPATILC*ALYWKRSRVYGSLTFF 335
           CC+E +Y R+I +M    +    +   +   P    C   +WK  R+Y S  ++
Sbjct: 31  CCNEQIYDRYIYRMDNRSYHENCVKCTICESPLAEKC---FWKNGRIYCSQHYY 81


>L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein
           protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 174 CCSELVYMRFILKMS*ARFRHLSII*RV*WLPATILC*ALYWKRSRVYGSLTFF 335
           CC+E +Y R+I +M    +    +   +   P    C   +WK  R+Y S  ++
Sbjct: 31  CCNEQIYDRYIYRMDNRSYHENCVKCTICESPLAEKC---FWKNGRIYCSQHYY 81


>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 574 REAVKGRAAVVTILETLELISQVGGAFTSWMSMGSTNHLTPGGL 443
           R A  G A+ VT   T+  +  +     +W ++GST   T GG+
Sbjct: 736 RAARDGGASGVTATNTVSSLMHMKADGNAWPAIGSTKRTTYGGM 779


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,076,632
Number of Sequences: 27780
Number of extensions: 278325
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)