Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30294
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    26   4.5  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   7.8  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    25   7.8  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   7.8  

>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 480 RTGFSKSWIVLEDFRSI-PFIECNGEGGTCHHF 575
           R G+  + IV   F  + PF+ C  E GT H F
Sbjct: 207 RRGYIPASIVSISFHPVEPFLACASENGTIHVF 239


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 169 ICWFLCEKVQYNAIPIL*LK*CL*LRKSYDRSYWLSTGQPI 291
           + ++LC+  +YN +PI  +   L L  S+D   W   G P+
Sbjct: 157 VLYWLCK--EYNFVPIYGVLLPLKLHPSFDTQLWNIYGYPV 195


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 381 QSNIRYSELPSWLE*IMDWLQF 446
           + N+R SE   W   +++W+QF
Sbjct: 114 RDNMRSSEKDQWKRGVLEWIQF 135


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 241 LRKSYDRSYW-LSTGQPIPMMPVEGQNIAKYISRCVVC 351
           LRK + R    ++ G P+P     G +I    +RC+ C
Sbjct: 152 LRKCFSRVIVNVTLGAPLPQQKSLGSSIGHMATRCISC 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,001
Number of Sequences: 5004
Number of extensions: 64779
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)