Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30294
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 4e-25
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 6e-24
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32) 107 6e-24
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 98 7e-21
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) 30 2.1
SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 6.3
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 28 8.3
SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 111 bits (268), Expect = 4e-25
Identities = 51/84 (60%), Positives = 61/84 (72%)
Frame = +2
Query: 2 PGAPCVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAGS 181
PG P S DF G L RHSQ VP+C LW+GYSLLY+ GNE+AH QDLG GS
Sbjct: 1565 PGPPGYS-DF--GFFLTRHSQTVRVPRCPEDRPPLWEGYSLLYVQGNERAHGQDLGSPGS 1621
Query: 182 CVRKFSTMPFLFCDLNDVCNYASR 253
C+++FSTMPFLFC++N+VCN ASR
Sbjct: 1622 CIQRFSTMPFLFCNINNVCNLASR 1645
Score = 103 bits (246), Expect = 2e-22
Identities = 41/66 (62%), Positives = 53/66 (80%)
Frame = +1
Query: 256 DRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWI 435
D S+WLST +PIPMMPV+ N+ YI RC VCEV ++V+AVHSQ++ +PSCP GW+ LW
Sbjct: 1647 DYSFWLSTPEPIPMMPVQETNVQPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQ 1706
Query: 436 GYSFVM 453
GYSF+M
Sbjct: 1707 GYSFLM 1712
Score = 84.6 bits (200), Expect = 7e-17
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LEDFR+ PFIEC+G G TCH++ + SFWL TV+ ++QF +P +TLK+G L ERVSRC
Sbjct: 1775 LEDFRAHPFIECHGRG-TCHYYGSTYSFWLATVDQNKQFRIPRPETLKAGNLRERVSRCQ 1833
Query: 690 V 692
V
Sbjct: 1834 V 1834
Score = 82.6 bits (195), Expect = 3e-16
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = +1
Query: 328 YISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGS 507
YI RC VCEV ++V+AVHSQ++ +PSCP GW+ LW GYSF+MHT L+SPGS
Sbjct: 1714 YIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGS 1773
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +2
Query: 56 HSQREVVPQCEPSHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLND 232
HSQ VP C LW GYS L++ Q L GSC+ F PF+ C
Sbjct: 1731 HSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGSCLEDFRAHPFIECHGRG 1790
Query: 233 VCNYASRT 256
C+Y T
Sbjct: 1791 TCHYYGST 1798
Score = 34.3 bits (75), Expect = 0.096
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 379 HSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGS 507
HSQT+ +P CP LW GYS +++ L SPGS
Sbjct: 1580 HSQTVRVPRCPEDRPPLWEGYS-LLYVQGNERAHGQDLGSPGS 1621
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 56 HSQREVVPQCEPSHVKLWDGYSLL 127
HSQ VP C LW GYS L
Sbjct: 1688 HSQSITVPSCPSGWSPLWQGYSFL 1711
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 107 bits (258), Expect = 6e-24
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 PGAPCVSQDFLT--GILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYA 175
PG P D +T G +V+HSQ P+C P++ KLWDGYSLLY+ G++ +H QDLG A
Sbjct: 1446 PGPPGPPGDGITKVGFYIVKHSQTTTPPECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQA 1505
Query: 176 GSCVRKFSTMPFLFCDLNDVCNYASR 253
GSC+++F+TMP+L+C++ CNYASR
Sbjct: 1506 GSCLKRFTTMPYLYCNIFGKCNYASR 1531
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LE FR PF EC+G G TCH++ANK SFWL TV + F + +TLK+G LL RVSRC
Sbjct: 1601 LESFRPNPFTECHGRG-TCHYYANKYSFWLATV--NTPFQTQQSETLKAGNLLSRVSRCQ 1657
Query: 690 V 692
V
Sbjct: 1658 V 1658
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = +1
Query: 256 DRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQ 387
D SYWLST +PMMP++ + YISRC VCE V+AVHS+
Sbjct: 1533 DYSYWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSK 1576
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 370 IAVHSQTLDIPSCPVGWNELWIGYSFV 450
I HSQT P CP +++LW GYS +
Sbjct: 1463 IVKHSQTTTPPECPPTYDKLWDGYSLL 1489
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 158 QDLGYAGSCVRKFSTMPFLFCDLNDVCNY 244
Q LG +GSC+ F PF C C+Y
Sbjct: 1592 QSLGSSGSCLESFRPNPFTECHGRGTCHY 1620
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
L+ F ++P++ CN G + N S+WL+T D+Q VP +++ + +SRC
Sbjct: 1509 LKRFTTMPYLYCNIFGKCNYASRNDYSYWLST--DNQ---VP-MMPIQASAVEPYISRCT 1562
Query: 690 V 692
V
Sbjct: 1563 V 1563
>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
Length = 176
Score = 107 bits (258), Expect = 6e-24
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 PGAPCVSQDFLT--GILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYA 175
PG P D +T G +V+HSQ P+C P++ KLWDGYSLLY+ G++ +H QDLG A
Sbjct: 50 PGPPGPPGDGITKVGFYIVKHSQTTTPPECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQA 109
Query: 176 GSCVRKFSTMPFLFCDLNDVCNYASR 253
GSC+++F+TMP+L+C++ CNYASR
Sbjct: 110 GSCLKRFTTMPYLYCNIFGKCNYASR 135
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 370 IAVHSQTLDIPSCPVGWNELWIGYSFV 450
I HSQT P CP +++LW GYS +
Sbjct: 67 IVKHSQTTTPPECPPTYDKLWDGYSLL 93
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 97.9 bits (233), Expect = 7e-21
Identities = 41/81 (50%), Positives = 51/81 (62%)
Frame = +1
Query: 265 YWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYS 444
YWLST +PMMP++ + YISRC VCE V+AVHSQ+ +P+CP GW+ LW GYS
Sbjct: 2 YWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSQSTTLPTCPGGWSSLWSGYS 61
Query: 445 FVMHTXXXXXXXXXXLASPGS 507
F+MHT L S GS
Sbjct: 62 FLMHTGAGGSGTGQSLGSSGS 82
Score = 75.4 bits (177), Expect = 4e-14
Identities = 36/61 (59%), Positives = 43/61 (70%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LE FR PFIEC+G G TCH++ANK SFWL TV + F + +TLK+G LL RVSRC
Sbjct: 84 LESFRPNPFIECHGRG-TCHYYANKYSFWLATV--NTPFQTQQSETLKAGNLLSRVSRCQ 140
Query: 690 V 692
V
Sbjct: 141 V 141
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 38 GILLVRHSQREVVPQCEPSHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFL 214
G ++ HSQ +P C LW GYS L++ Q LG +GSC+ F PF+
Sbjct: 34 GPVMAVHSQSTTLPTCPGGWSSLWSGYSFLMHTGAGGSGTGQSLGSSGSCLESFRPNPFI 93
Query: 215 FCDLNDVCNY 244
C C+Y
Sbjct: 94 ECHGRGTCHY 103
>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 244 RKSYDRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPV 414
R Y Y ++ P + G+++ + C VC VP+ S L IPS CP
Sbjct: 84 RYMYGAEYQVNDRSPFTL----GKSLHDHDVPCAVCYVPSR-----STQLMIPSVARCPT 134
Query: 415 GWNELWIGY 441
GW+ + GY
Sbjct: 135 GWSREYYGY 143
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 310 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGYSFVMH 456
G ++ + C VC VP+ S L IP+ CP GW+ + GY H
Sbjct: 55 GNSLQDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTEH 101
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 310 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 441
G+++ + C VC VP+ S L IP+ CP GW+ + GY
Sbjct: 415 GKSLHDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 456
>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
Length = 288
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 310 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGYSFVMH 456
G+ + ++ C VC VP+ S L IP+ CP GW+ + GY H
Sbjct: 141 GKALHEHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTSH 187
>SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 310 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 441
G+++ + C VC VP+ S L IP+ CP GW+ + GY
Sbjct: 79 GKSLQNHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 120
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 253 YDRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWN 423
Y Y +S P G+ + ++ C VC VP+ S L IP+ CP GW+
Sbjct: 52 YGAEYEVSDRSPF----TRGKALHEHDVPCAVCYVPSR-----STQLMIPAVARCPAGWS 102
Query: 424 ELWIGY 441
+ GY
Sbjct: 103 REYYGY 108
>SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 310 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 441
G+++ + C VC VP+ S L IP+ CP GW+ + GY
Sbjct: 115 GKSLHDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 156
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 128 YIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRTTV 262
Y D + K + + G +G S PFL C L+ C A R +V
Sbjct: 364 YWDNSFKCFSTESGQSGCTRIATSPQPFLSCSLSFACLLAHRASV 408
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 471 SRWRTGFSKSWIV 509
+RWRTG SK+WIV
Sbjct: 1075 TRWRTGQSKAWIV 1087
>SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +1
Query: 253 YDRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWN 423
Y Y +S P G+ + + C VC VP+ S L IP+ CP GW+
Sbjct: 173 YGAEYQVSDRSPF----TRGKALHDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWS 223
Query: 424 ELWIGY 441
+ GY
Sbjct: 224 REYYGY 229
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +1
Query: 253 YDRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWN 423
Y Y +S P G+ + + C VC VP+ S L IP+ CP GW+
Sbjct: 57 YGAEYQVSDRSPF----TRGKALHDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWS 107
Query: 424 ELWIGY 441
+ GY
Sbjct: 108 REYYGY 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,262,260
Number of Sequences: 59808
Number of extensions: 474753
Number of successful extensions: 868
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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