Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30294
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 130 9e-31
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 130 9e-31
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 130 9e-31
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 130 9e-31
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 130 9e-31
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 128 4e-30
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 105 2e-23
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 105 2e-23
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 105 2e-23
U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik... 28 7.3
AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical ... 28 7.3
Z71262-7|CAA95811.2| 368|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 130 bits (314), Expect = 9e-31
Identities = 56/85 (65%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 PGAP-CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAG 178
PGAP + G +LV+HSQ VP+C KLWDGYSLLYI+GNEK+HNQDLG+AG
Sbjct: 1519 PGAPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAG 1578
Query: 179 SCVRKFSTMPFLFCDLNDVCNYASR 253
SC+++FSTMPFLFCD N+VCNYASR
Sbjct: 1579 SCLQRFSTMPFLFCDFNNVCNYASR 1603
Score = 120 bits (288), Expect = 1e-27
Identities = 51/84 (60%), Positives = 59/84 (70%)
Frame = +1
Query: 256 DRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWI 435
++SYWLST + IPMMPV + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWI
Sbjct: 1605 EKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWI 1664
Query: 436 GYSFVMHTXXXXXXXXXXLASPGS 507
GYSF MHT +SPGS
Sbjct: 1665 GYSFAMHTGAGAEGGGQSPSSPGS 1688
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC
Sbjct: 1690 LEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQ 1749
Query: 690 V 692
V
Sbjct: 1750 V 1750
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 HSQREVVPQCEPSHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCD-LN 229
HSQ +P C LW GYS ++ + Q GSC+ F PF+ C+
Sbjct: 1646 HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGAR 1705
Query: 230 DVCNY 244
C+Y
Sbjct: 1706 GSCHY 1710
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 367 VIAVHSQTLDIPSCPVGWNELWIGYSFV 450
V+ HSQT ++P CP G +LW GYS +
Sbjct: 1534 VLVKHSQTTEVPRCPEGQTKLWDGYSLL 1561
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
L+ F ++PF+ C+ + N+ S+WL+T E V ER ++ +SRCA
Sbjct: 1581 LQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNER------EIEPYISRCA 1634
Query: 690 V 692
V
Sbjct: 1635 V 1635
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 130 bits (314), Expect = 9e-31
Identities = 56/85 (65%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 PGAP-CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAG 178
PGAP + G +LV+HSQ VP+C KLWDGYSLLYI+GNEK+HNQDLG+AG
Sbjct: 1518 PGAPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAG 1577
Query: 179 SCVRKFSTMPFLFCDLNDVCNYASR 253
SC+++FSTMPFLFCD N+VCNYASR
Sbjct: 1578 SCLQRFSTMPFLFCDFNNVCNYASR 1602
Score = 120 bits (288), Expect = 1e-27
Identities = 51/84 (60%), Positives = 59/84 (70%)
Frame = +1
Query: 256 DRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWI 435
++SYWLST + IPMMPV + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWI
Sbjct: 1604 EKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWI 1663
Query: 436 GYSFVMHTXXXXXXXXXXLASPGS 507
GYSF MHT +SPGS
Sbjct: 1664 GYSFAMHTGAGAEGGGQSPSSPGS 1687
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC
Sbjct: 1689 LEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQ 1748
Query: 690 V 692
V
Sbjct: 1749 V 1749
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 HSQREVVPQCEPSHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCD-LN 229
HSQ +P C LW GYS ++ + Q GSC+ F PF+ C+
Sbjct: 1645 HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGAR 1704
Query: 230 DVCNY 244
C+Y
Sbjct: 1705 GSCHY 1709
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 367 VIAVHSQTLDIPSCPVGWNELWIGYSFV 450
V+ HSQT ++P CP G +LW GYS +
Sbjct: 1533 VLVKHSQTTEVPRCPEGQTKLWDGYSLL 1560
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
L+ F ++PF+ C+ + N+ S+WL+T E V ER ++ +SRCA
Sbjct: 1580 LQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNER------EIEPYISRCA 1633
Query: 690 V 692
V
Sbjct: 1634 V 1634
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 130 bits (314), Expect = 9e-31
Identities = 56/85 (65%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 PGAP-CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAG 178
PGAP + G +LV+HSQ VP+C KLWDGYSLLYI+GNEK+HNQDLG+AG
Sbjct: 1518 PGAPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAG 1577
Query: 179 SCVRKFSTMPFLFCDLNDVCNYASR 253
SC+++FSTMPFLFCD N+VCNYASR
Sbjct: 1578 SCLQRFSTMPFLFCDFNNVCNYASR 1602
Score = 124 bits (299), Expect = 6e-29
Identities = 53/84 (63%), Positives = 60/84 (71%)
Frame = +1
Query: 256 DRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWI 435
D+SYWLST + IPMMPV + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWI
Sbjct: 1604 DKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWI 1663
Query: 436 GYSFVMHTXXXXXXXXXXLASPGS 507
GYSF MHT L+SPGS
Sbjct: 1664 GYSFAMHTGAGAEGGGQSLSSPGS 1687
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC
Sbjct: 1689 LEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQ 1748
Query: 690 V 692
V
Sbjct: 1749 V 1749
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 HSQREVVPQCEPSHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCD-LN 229
HSQ +P C LW GYS ++ + Q L GSC+ F PF+ C+
Sbjct: 1645 HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGAR 1704
Query: 230 DVCNY 244
C+Y
Sbjct: 1705 GSCHY 1709
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 367 VIAVHSQTLDIPSCPVGWNELWIGYSFV 450
V+ HSQT ++P CP G +LW GYS +
Sbjct: 1533 VLVKHSQTTEVPRCPEGQTKLWDGYSLL 1560
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
L+ F ++PF+ C+ + N S+WL+T E V ER ++ +SRCA
Sbjct: 1580 LQRFSTMPFLFCDFNNVCNYASRNDKSYWLSTSEAIPMMPVNER------EIEPYISRCA 1633
Query: 690 V 692
V
Sbjct: 1634 V 1634
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 130 bits (314), Expect = 9e-31
Identities = 56/85 (65%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 PGAP-CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAG 178
PGAP + G +LV+HSQ VP+C KLWDGYSLLYI+GNEK+HNQDLG+AG
Sbjct: 1519 PGAPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAG 1578
Query: 179 SCVRKFSTMPFLFCDLNDVCNYASR 253
SC+++FSTMPFLFCD N+VCNYASR
Sbjct: 1579 SCLQRFSTMPFLFCDFNNVCNYASR 1603
Score = 124 bits (299), Expect = 6e-29
Identities = 53/84 (63%), Positives = 60/84 (71%)
Frame = +1
Query: 256 DRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWI 435
D+SYWLST + IPMMPV + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWI
Sbjct: 1605 DKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWI 1664
Query: 436 GYSFVMHTXXXXXXXXXXLASPGS 507
GYSF MHT L+SPGS
Sbjct: 1665 GYSFAMHTGAGAEGGGQSLSSPGS 1688
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC
Sbjct: 1690 LEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQ 1749
Query: 690 V 692
V
Sbjct: 1750 V 1750
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 HSQREVVPQCEPSHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCD-LN 229
HSQ +P C LW GYS ++ + Q L GSC+ F PF+ C+
Sbjct: 1646 HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGAR 1705
Query: 230 DVCNY 244
C+Y
Sbjct: 1706 GSCHY 1710
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 367 VIAVHSQTLDIPSCPVGWNELWIGYSFV 450
V+ HSQT ++P CP G +LW GYS +
Sbjct: 1534 VLVKHSQTTEVPRCPEGQTKLWDGYSLL 1561
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
L+ F ++PF+ C+ + N S+WL+T E V ER ++ +SRCA
Sbjct: 1581 LQRFSTMPFLFCDFNNVCNYASRNDKSYWLSTSEAIPMMPVNER------EIEPYISRCA 1634
Query: 690 V 692
V
Sbjct: 1635 V 1635
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 130 bits (314), Expect = 9e-31
Identities = 56/85 (65%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 PGAP-CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAG 178
PGAP + G +LV+HSQ VP+C KLWDGYSLLYI+GNEK+HNQDLG+AG
Sbjct: 1555 PGAPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAG 1614
Query: 179 SCVRKFSTMPFLFCDLNDVCNYASR 253
SC+++FSTMPFLFCD N+VCNYASR
Sbjct: 1615 SCLQRFSTMPFLFCDFNNVCNYASR 1639
Score = 120 bits (288), Expect = 1e-27
Identities = 51/84 (60%), Positives = 59/84 (70%)
Frame = +1
Query: 256 DRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWI 435
++SYWLST + IPMMPV + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWI
Sbjct: 1641 EKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWI 1700
Query: 436 GYSFVMHTXXXXXXXXXXLASPGS 507
GYSF MHT +SPGS
Sbjct: 1701 GYSFAMHTGAGAEGGGQSPSSPGS 1724
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC
Sbjct: 1726 LEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQ 1785
Query: 690 V 692
V
Sbjct: 1786 V 1786
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 HSQREVVPQCEPSHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCD-LN 229
HSQ +P C LW GYS ++ + Q GSC+ F PF+ C+
Sbjct: 1682 HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGAR 1741
Query: 230 DVCNY 244
C+Y
Sbjct: 1742 GSCHY 1746
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 367 VIAVHSQTLDIPSCPVGWNELWIGYSFV 450
V+ HSQT ++P CP G +LW GYS +
Sbjct: 1570 VLVKHSQTTEVPRCPEGQTKLWDGYSLL 1597
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
L+ F ++PF+ C+ + N+ S+WL+T E V ER ++ +SRCA
Sbjct: 1617 LQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNER------EIEPYISRCA 1670
Query: 690 V 692
V
Sbjct: 1671 V 1671
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 128 bits (309), Expect = 4e-30
Identities = 55/85 (64%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 PGAP-CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAG 178
PG P + G +LV+HSQ VP+C KLWDGYSLLYI+GNEK+HNQDLG+AG
Sbjct: 21 PGLPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAG 80
Query: 179 SCVRKFSTMPFLFCDLNDVCNYASR 253
SC+++FSTMPFLFCD N+VCNYASR
Sbjct: 81 SCLQRFSTMPFLFCDFNNVCNYASR 105
Score = 122 bits (295), Expect = 2e-28
Identities = 52/84 (61%), Positives = 60/84 (71%)
Frame = +1
Query: 256 DRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWI 435
++SYWLST + IPMMPV + I YISRC VCE PAN IAVHSQT+ IP+CP GW+ LWI
Sbjct: 107 EKSYWLSTSEAIPMMPVNEREIEPYISRCAVCEAPANTIAVHSQTIQIPNCPAGWSSLWI 166
Query: 436 GYSFVMHTXXXXXXXXXXLASPGS 507
GYSF MHT L+SPGS
Sbjct: 167 GYSFAMHTGAGAEGGGQSLSSPGS 190
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LEDFR+ PFIECNG G+CH+FANK SFWLTT+++ +F VPE QTLKSG L RVSRC
Sbjct: 192 LEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQ 251
Query: 690 V 692
V
Sbjct: 252 V 252
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 HSQREVVPQCEPSHVKLWDGYSL-LYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCD-LN 229
HSQ +P C LW GYS ++ + Q L GSC+ F PF+ C+
Sbjct: 148 HSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGAR 207
Query: 230 DVCNY 244
C+Y
Sbjct: 208 GSCHY 212
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 367 VIAVHSQTLDIPSCPVGWNELWIGYSFV 450
V+ HSQT ++P CP G +LW GYS +
Sbjct: 36 VLVKHSQTTEVPRCPEGQTKLWDGYSLL 63
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
L+ F ++PF+ C+ + N+ S+WL+T E V ER ++ +SRCA
Sbjct: 83 LQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMMPVNER------EIEPYISRCA 136
Query: 690 V 692
V
Sbjct: 137 V 137
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 105 bits (253), Expect = 2e-23
Identities = 49/86 (56%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 DRSYWLSTGQPI-PMM-PVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNEL 429
D S+WLST +P+ PMM PV G I YISRC VCEVP +IAVHSQ +P CP GW+ +
Sbjct: 1351 DYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQDTSVPQCPQGWSGM 1410
Query: 430 WIGYSFVMHTXXXXXXXXXXLASPGS 507
W GYSFVMHT L SPGS
Sbjct: 1411 WTGYSFVMHTAAGAEGTGQSLQSPGS 1436
Score = 100 bits (239), Expect = 1e-21
Identities = 40/72 (55%), Positives = 52/72 (72%)
Frame = +2
Query: 38 GILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 217
G +HSQ VPQC P +LW+GYSLLY+ GN +A QDLG GSC+ KF+TMPF+F
Sbjct: 1278 GFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMF 1337
Query: 218 CDLNDVCNYASR 253
C++N VC+ +SR
Sbjct: 1338 CNMNSVCHVSSR 1349
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LE+FR++PFIEC+G G TC+++A FWL+ V+ +QF P QTLK+G L +RVSRC
Sbjct: 1438 LEEFRAVPFIECHGRG-TCNYYATNHGFWLSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQ 1496
Query: 690 V 692
V
Sbjct: 1497 V 1497
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 14 CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 190
C + T I+ V HSQ VPQC +W GYS +++ + Q L GSC+
Sbjct: 1381 CAVCEVPTQIIAV-HSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLE 1439
Query: 191 KFSTMPFLFCDLNDVCNY 244
+F +PF+ C CNY
Sbjct: 1440 EFRAVPFIECHGRGTCNY 1457
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 373 AVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGS 507
A HSQT +P CP G ++LW GYS +++ L PGS
Sbjct: 1282 AKHSQTTAVPQCPPGASQLWEGYS-LLYVQGNGRASGQDLGQPGS 1325
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 105 bits (253), Expect = 2e-23
Identities = 49/86 (56%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 DRSYWLSTGQPI-PMM-PVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNEL 429
D S+WLST +P+ PMM PV G I YISRC VCEVP +IAVHSQ +P CP GW+ +
Sbjct: 1608 DYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQDTSVPQCPQGWSGM 1667
Query: 430 WIGYSFVMHTXXXXXXXXXXLASPGS 507
W GYSFVMHT L SPGS
Sbjct: 1668 WTGYSFVMHTAAGAEGTGQSLQSPGS 1693
Score = 100 bits (239), Expect = 1e-21
Identities = 40/72 (55%), Positives = 52/72 (72%)
Frame = +2
Query: 38 GILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 217
G +HSQ VPQC P +LW+GYSLLY+ GN +A QDLG GSC+ KF+TMPF+F
Sbjct: 1535 GFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMF 1594
Query: 218 CDLNDVCNYASR 253
C++N VC+ +SR
Sbjct: 1595 CNMNSVCHVSSR 1606
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LE+FR++PFIEC+G G TC+++A FWL+ V+ +QF P QTLK+G L +RVSRC
Sbjct: 1695 LEEFRAVPFIECHGRG-TCNYYATNHGFWLSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQ 1753
Query: 690 V 692
V
Sbjct: 1754 V 1754
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 14 CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 190
C + T I+ V HSQ VPQC +W GYS +++ + Q L GSC+
Sbjct: 1638 CAVCEVPTQIIAV-HSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLE 1696
Query: 191 KFSTMPFLFCDLNDVCNY 244
+F +PF+ C CNY
Sbjct: 1697 EFRAVPFIECHGRGTCNY 1714
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 373 AVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGS 507
A HSQT +P CP G ++LW GYS +++ L PGS
Sbjct: 1539 AKHSQTTAVPQCPPGASQLWEGYS-LLYVQGNGRASGQDLGQPGS 1582
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 105 bits (253), Expect = 2e-23
Identities = 49/86 (56%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 DRSYWLSTGQPI-PMM-PVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNEL 429
D S+WLST +P+ PMM PV G I YISRC VCEVP +IAVHSQ +P CP GW+ +
Sbjct: 1607 DYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQDTSVPQCPQGWSGM 1666
Query: 430 WIGYSFVMHTXXXXXXXXXXLASPGS 507
W GYSFVMHT L SPGS
Sbjct: 1667 WTGYSFVMHTAAGAEGTGQSLQSPGS 1692
Score = 100 bits (239), Expect = 1e-21
Identities = 40/72 (55%), Positives = 52/72 (72%)
Frame = +2
Query: 38 GILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 217
G +HSQ VPQC P +LW+GYSLLY+ GN +A QDLG GSC+ KF+TMPF+F
Sbjct: 1534 GFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMF 1593
Query: 218 CDLNDVCNYASR 253
C++N VC+ +SR
Sbjct: 1594 CNMNSVCHVSSR 1605
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LE+FR++PFIEC+G G TC+++A FW + V+ +QF P QTLK+G L +RVSRC
Sbjct: 1694 LEEFRAVPFIECHGRG-TCNYYATNHGFWPSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQ 1752
Query: 690 V 692
V
Sbjct: 1753 V 1753
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 14 CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 190
C + T I+ V HSQ VPQC +W GYS +++ + Q L GSC+
Sbjct: 1637 CAVCEVPTQIIAV-HSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLE 1695
Query: 191 KFSTMPFLFCDLNDVCNY 244
+F +PF+ C CNY
Sbjct: 1696 EFRAVPFIECHGRGTCNY 1713
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 373 AVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGS 507
A HSQT +P CP G ++LW GYS +++ L PGS
Sbjct: 1538 AKHSQTTAVPQCPPGASQLWEGYS-LLYVQGNGRASGQDLGQPGS 1581
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 105 bits (253), Expect = 2e-23
Identities = 49/86 (56%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 DRSYWLSTGQPI-PMM-PVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNEL 429
D S+WLST +P+ PMM PV G I YISRC VCEVP +IAVHSQ +P CP GW+ +
Sbjct: 162 DYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQDTSVPQCPQGWSGM 221
Query: 430 WIGYSFVMHTXXXXXXXXXXLASPGS 507
W GYSFVMHT L SPGS
Sbjct: 222 WTGYSFVMHTAAGAEGTGQSLQSPGS 247
Score = 100 bits (239), Expect = 1e-21
Identities = 40/72 (55%), Positives = 52/72 (72%)
Frame = +2
Query: 38 GILLVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLF 217
G +HSQ VPQC P +LW+GYSLLY+ GN +A QDLG GSC+ KF+TMPF+F
Sbjct: 89 GFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMF 148
Query: 218 CDLNDVCNYASR 253
C++N VC+ +SR
Sbjct: 149 CNMNSVCHVSSR 160
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = +3
Query: 510 LEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVSRCA 689
LE+FR++PFIEC+G G TC+++A FW + V+ +QF P QTLK+G L +RVSRC
Sbjct: 249 LEEFRAVPFIECHGRG-TCNYYATNHGFWPSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQ 307
Query: 690 V 692
V
Sbjct: 308 V 308
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 14 CVSQDFLTGILLVRHSQREVVPQCEPSHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVR 190
C + T I+ V HSQ VPQC +W GYS +++ + Q L GSC+
Sbjct: 192 CAVCEVPTQIIAV-HSQDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLE 250
Query: 191 KFSTMPFLFCDLNDVCNY 244
+F +PF+ C CNY
Sbjct: 251 EFRAVPFIECHGRGTCNY 268
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 373 AVHSQTLDIPSCPVGWNELWIGYSFVMHTXXXXXXXXXXLASPGS 507
A HSQT +P CP G ++LW GYS +++ L PGS
Sbjct: 93 AKHSQTTAVPQCPPGASQLWEGYS-LLYVQGNGRASGQDLGQPGS 136
>U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical
protein C52B9.4 protein.
Length = 558
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 316 NIAKYISRCVVCEVPANVI-AVHSQTLDI-PSCPVGWNELWIGYSF 447
N+ ++ + + V A+VI + S I P+C V W ELW+ +F
Sbjct: 391 NVYRHFANTLAFSVIASVIFMLWSMIYHIFPTCRVDWKELWVDTAF 436
>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 185 VRKFSTMPFLFCDLNDVCNYASRTTVVIGYPLVNQYQ*CLLRDKILPNI 331
+RK PFLF ++ D C + V G L+ L D+ILP +
Sbjct: 814 LRKLCNHPFLFPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKL 862
>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 185 VRKFSTMPFLFCDLNDVCNYASRTTVVIGYPLVNQYQ*CLLRDKILPNI 331
+RK PFLF ++ D C + V G L+ L D+ILP +
Sbjct: 814 LRKLCNHPFLFPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKL 862
>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
protein protein.
Length = 1474
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 185 VRKFSTMPFLFCDLNDVCNYASRTTVVIGYPLVNQYQ*CLLRDKILPNI 331
+RK PFLF ++ D C + V G L+ L D+ILP +
Sbjct: 814 LRKLCNHPFLFPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKL 862
>AF026206-1|AAK39306.1| 260|Caenorhabditis elegans Hypothetical
protein T28B4.2 protein.
Length = 260
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 378 TQSNIRYSELPSWLE*IMDWLQFCYAHWCR 467
T++ + Y +LP E + WL + Y WCR
Sbjct: 150 TRTKVLYEDLPDPSE--LRWLSWMYFRWCR 177
>Z71262-7|CAA95811.2| 368|Caenorhabditis elegans Hypothetical
protein F22D6.9 protein.
Length = 368
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 68 EVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFS 199
EVV H++ D +LL + + N+ G+ G CVR++S
Sbjct: 154 EVVLMLFAMHLRWPDRVTLLRGNHESRPVNRQYGFYGECVRRYS 197
>AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical
protein F23H11.2 protein.
Length = 865
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 445 NCNQSIIHSNQLGNSEYLMFDCVLQS 368
+C + HS Q GN E+L F V+++
Sbjct: 158 HCQVAFCHSEQCGNDEHLRFVAVMEN 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,144
Number of Sequences: 27780
Number of extensions: 359354
Number of successful extensions: 766
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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