Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30294
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72760.1 68414.m08413 protein kinase family protein contains ...    31   0.96 
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ...    29   2.2  
At1g47450.1 68414.m05260 expressed protein                             29   2.2  
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    27   9.0  

>At1g72760.1 68414.m08413 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 697

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 77  PQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRK 193
           PQC   HV+L D     + D  ++AH   L + G C RK
Sbjct: 43  PQCVLIHVQLGDTGGHFHQDNPDEAHEFFLPFRGFCARK 81


>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1923

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 143 EKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRTTVVIGYPLVNQYQ 295
           EKAH  D    G  VR+F T+ F   + ++  + ASR     G  + + YQ
Sbjct: 71  EKAHRLDPSSGGRGVRQFKTLLFQRLERDNASSLASRVKKTDGREVESFYQ 121


>At1g47450.1 68414.m05260 expressed protein
          Length = 169

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +2

Query: 47  LVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYA----GSCVRK 193
           ++    RE++   +  H +L +G+S +Y+ GN  A ++D+ Y+      CVR+
Sbjct: 105 IINECCREILKMGKDCHFRLVEGWSAMYVYGNSIA-SKDIPYSKQSWNECVRR 156


>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 248 LRNYRHHLSHKIGMALY*TFSHKNQHILNLDYGLFRCHLCTIKNIHPI 105
           +  +RH +S    +     F    +  +N+DYG + C  C+   +H I
Sbjct: 247 ISRHRHRISFTFSLTSREWFCGVCRLSINVDYGAYTCDTCSDYVVHSI 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,789
Number of Sequences: 28952
Number of extensions: 324290
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)