Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30293
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 153 2e-37
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 38 0.006
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.042
SB_44932| Best HMM Match : CC (HMM E-Value=5.2) 32 0.39
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 31 0.90
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 30 1.6
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 29 2.7
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 29 3.6
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 29 4.8
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_30824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1) 28 6.3
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08) 28 6.3
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058) 28 8.4
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 153 bits (370), Expect = 2e-37
Identities = 69/84 (82%), Positives = 79/84 (94%)
Frame = +1
Query: 256 ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIXTEVKSVEMHHEA 435
+RP+ PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+NI TEVKSVEMHHE+
Sbjct: 98 SRPSGLPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHES 157
Query: 436 LQEAVPGDNVGFNVKNVSVKELRR 507
L EA+PGDNVGFNVKNVSVK+++R
Sbjct: 158 LAEALPGDNVGFNVKNVSVKDIKR 181
Score = 57.6 bits (133), Expect = 9e-09
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +2
Query: 596 ISNGYTPVLDCHTXHIACKFAEIKEKVDRRTGK 694
I GY+PVLDCHT HIACKF ++ EK+DRR+GK
Sbjct: 212 IHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGK 244
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3
Query: 513 VAGDSKNNPPKGAADFTAQVIVLNHPGQ 596
VAGD KNNPPK FTAQVIV+NHPG+
Sbjct: 184 VAGDFKNNPPKPCKSFTAQVIVMNHPGE 211
Score = 31.5 bits (68), Expect = 0.68
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 140 NMLEPSTKMPWFKGWQVER 196
NM+ +++MPWFK W +ER
Sbjct: 53 NMITGTSQMPWFKQWTIER 71
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +2
Query: 2 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 97
KMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 35.5 bits (78), Expect = 0.042
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = -3
Query: 659 LQICRQCGQCGNPTLVCNRLRLTRMVKHNDLSCKICSTLRWVVFGV-TSNITRRNSLTDT 483
L +C QCGQC +P C +++ +M+ C C+ G + + +S +
Sbjct: 767 LIVCSQCGQCFHP--YCVGVKVNKMILSKGWRCLDCTLCEGCGKGSDEARLLLCDSCDIS 824
Query: 482 FFT--LKPTLSP-GTASWRASWCISTD 411
+ T L P L W+ WC+S D
Sbjct: 825 YHTYCLDPPLEKVPPGGWKCKWCVSCD 851
>SB_44932| Best HMM Match : CC (HMM E-Value=5.2)
Length = 193
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -1
Query: 313 HRFCIRLAGEDAGACQWGGQWQDGIESFN----EAFSVSFAFLTLHLPSLEPR 167
H C+ + ED G + G +DG+++ EA FLT L +LEPR
Sbjct: 71 HPCCVTIIDEDEGQVEHGLSGEDGVKTLLTQQLEALQEQRTFLTAKLTTLEPR 123
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +1
Query: 268 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI----XTEVKSVEMHHEA 435
++P + D Y + G+GTV G G+++ ++ P + ++S+
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMP 161
Query: 436 LQEAVPGDNVGFNVK 480
++E G F++K
Sbjct: 162 VKEVRGGQTASFSLK 176
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 259 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIXTEVKSVEMHHEAL 438
R T L + + I G GT+ G + +G + V + +VKS++M + +
Sbjct: 106 RTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKKPV 165
Query: 439 QEAVPGD 459
+A GD
Sbjct: 166 DKASQGD 172
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = -3
Query: 524 VTSNITRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVXMLAGAKTTMVPGFNTPV 345
+T++ T S+T T T ++ T S +TD+TS+ M+ TT + +
Sbjct: 117 ITTSTTDITSITMTITTSTTDITSKTMIITTS---TTDITSITMIITTSTTDITSITMII 173
Query: 344 STLPTGTVPIPPILYTS 294
+T T I I+ TS
Sbjct: 174 TTSTTDITSITMIITTS 190
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 464 TLSPGTASWRASWCISTDLTSVXMLAGAKTTMVPGFNT-PVSTLPTGTVPIP 312
TLSPGT + + S +A +TT+ P T PV+TLP + P
Sbjct: 32 TLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLPPDSTMAP 83
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 468 TYIVSRYSFLESFVVHLHRFDFSXDVGGGKD---NNGTWFQHTSFNSADGHGTNTTDFVY 298
T ++SRYS++E + H + + + GG + TW Q F++ H +N + Y
Sbjct: 106 TSLISRYSYIEKLMTHHYTY---RHISGGDPLHIPDLTWEQLKKFHATHYHPSNARFYTY 162
>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1054
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 608 NRLRLTRMVKHNDLSCKICSTLRWVVFGVTSNITRRNSLTDTF 480
+R L R+++H +S KI + +R G+T + LTD F
Sbjct: 713 DRQTLRRLLRHYGVSEKITNIIRKSYEGMTCRVVHGRQLTDAF 755
>SB_30824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 277 GACQWGGQWQDGIESFNEAFSVSFAF 200
G+ WGG++ G +S EAF+ S +F
Sbjct: 6 GSKLWGGRFTGGTDSVMEAFNASISF 31
>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
Length = 674
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 656 QICRQCGQCGNPTLVCNRLRLTRMV 582
Q C +CG+C P+L R +++R++
Sbjct: 77 QECEECGECATPSLKDFRCQVSRLI 101
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 6.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 128 WHGDNMLEPSTKMPWFKGWQVERKE 202
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 11 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 151
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
Length = 421
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 608 NRLRLTRMVKHNDLSCKICSTLRWVVFGVTSNITRRNSLTDTF 480
+R L R+++H +S KI + +R G+T + LTD F
Sbjct: 69 DRQTLWRLLRHYGVSEKITNIIRKSYEGMTCRVVHGRQLTDAF 111
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 184 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 74
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
>SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058)
Length = 874
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 305 LYTSCRGRRRGLSVGRAVAGWHR 237
L +SCRGRRR S +A AG HR
Sbjct: 739 LRSSCRGRRRD-SAHKATAGGHR 760
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,533,590
Number of Sequences: 59808
Number of extensions: 562289
Number of successful extensions: 2005
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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