Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30293
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 157 7e-39
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 157 7e-39
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 157 7e-39
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 47 1e-05
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 47 1e-05
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 47 1e-05
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 45 5e-05
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 44 1e-04
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 43 2e-04
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 39 0.004
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 36 0.037
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 36 0.037
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 2.4
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.4
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.4
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.4
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.4
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 29 4.2
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 7.4
AL132864-2|CAB60592.1| 201|Caenorhabditis elegans Hypothetical ... 28 7.4
Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 27 9.8
U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 27 9.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 157 bits (381), Expect = 7e-39
Identities = 70/83 (84%), Positives = 78/83 (93%)
Frame = +1
Query: 259 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIXTEVKSVEMHHEAL 438
RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+ TEVKSVEMHHE+L
Sbjct: 206 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 265
Query: 439 QEAVPGDNVGFNVKNVSVKELRR 507
EAVPGDNVGFNVKNVSVK++RR
Sbjct: 266 PEAVPGDNVGFNVKNVSVKDIRR 288
Score = 125 bits (302), Expect = 3e-29
Identities = 56/73 (76%), Positives = 61/73 (83%)
Frame = +2
Query: 2 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 181
KMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKG
Sbjct: 120 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKG 179
Query: 182 WQVERKEGKADGK 220
W VERKEG A GK
Sbjct: 180 WAVERKEGNASGK 192
Score = 70.9 bits (166), Expect = 8e-13
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +2
Query: 596 ISNGYTPVLDCHTXHIACKFAEIKEKVDRRTGK 694
ISNGYTPVLDCHT HIACKF E+KEKVDRRTGK
Sbjct: 319 ISNGYTPVLDCHTAHIACKFNELKEKVDRRTGK 351
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 513 VAGDSKNNPPKGAADFTAQVIVLNHPGQ 596
V DSK +P K A F AQVI++NHPGQ
Sbjct: 291 VCSDSKQDPAKEARTFHAQVIIMNHPGQ 318
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 157 bits (381), Expect = 7e-39
Identities = 70/83 (84%), Positives = 78/83 (93%)
Frame = +1
Query: 259 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIXTEVKSVEMHHEAL 438
RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+ TEVKSVEMHHE+L
Sbjct: 240 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 299
Query: 439 QEAVPGDNVGFNVKNVSVKELRR 507
EAVPGDNVGFNVKNVSVK++RR
Sbjct: 300 PEAVPGDNVGFNVKNVSVKDIRR 322
Score = 125 bits (302), Expect = 3e-29
Identities = 56/73 (76%), Positives = 61/73 (83%)
Frame = +2
Query: 2 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 181
KMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKG
Sbjct: 154 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKG 213
Query: 182 WQVERKEGKADGK 220
W VERKEG A GK
Sbjct: 214 WAVERKEGNASGK 226
Score = 70.9 bits (166), Expect = 8e-13
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +2
Query: 596 ISNGYTPVLDCHTXHIACKFAEIKEKVDRRTGK 694
ISNGYTPVLDCHT HIACKF E+KEKVDRRTGK
Sbjct: 353 ISNGYTPVLDCHTAHIACKFNELKEKVDRRTGK 385
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 513 VAGDSKNNPPKGAADFTAQVIVLNHPGQ 596
V DSK +P K A F AQVI++NHPGQ
Sbjct: 325 VCSDSKQDPAKEARTFHAQVIIMNHPGQ 352
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 157 bits (381), Expect = 7e-39
Identities = 70/83 (84%), Positives = 78/83 (93%)
Frame = +1
Query: 259 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIXTEVKSVEMHHEAL 438
RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+ TEVKSVEMHHE+L
Sbjct: 240 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 299
Query: 439 QEAVPGDNVGFNVKNVSVKELRR 507
EAVPGDNVGFNVKNVSVK++RR
Sbjct: 300 PEAVPGDNVGFNVKNVSVKDIRR 322
Score = 125 bits (302), Expect = 3e-29
Identities = 56/73 (76%), Positives = 61/73 (83%)
Frame = +2
Query: 2 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 181
KMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKG
Sbjct: 154 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKG 213
Query: 182 WQVERKEGKADGK 220
W VERKEG A GK
Sbjct: 214 WAVERKEGNASGK 226
Score = 70.9 bits (166), Expect = 8e-13
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +2
Query: 596 ISNGYTPVLDCHTXHIACKFAEIKEKVDRRTGK 694
ISNGYTPVLDCHT HIACKF E+KEKVDRRTGK
Sbjct: 353 ISNGYTPVLDCHTAHIACKFNELKEKVDRRTGK 385
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 513 VAGDSKNNPPKGAADFTAQVIVLNHPGQ 596
V DSK +P K A F AQVI++NHPGQ
Sbjct: 325 VCSDSKQDPAKEARTFHAQVIIMNHPGQ 352
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +1
Query: 292 QDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANIXTEVKSV----EMHHEALQEAVPG 456
+ VY I G GTV G++E G+LK G I + T VKSV E + + +A PG
Sbjct: 257 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 316
Query: 457 DNVGFNVKNVSVKELRRVMLLVTPKTTH 540
D +G ++ + K++RR +L+ H
Sbjct: 317 DQLGVLLRGLGPKDVRRGCVLLPQGHKH 344
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +1
Query: 292 QDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANIXTEVKSV----EMHHEALQEAVPG 456
+ VY I G GTV G++E G+LK G I + T VKSV E + + +A PG
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
Query: 457 DNVGFNVKNVSVKELRRVMLLVTPKTTH 540
D +G ++ + K++RR +L+ H
Sbjct: 318 DQLGVLLRGLGPKDVRRGCVLLPQGHKH 345
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +1
Query: 292 QDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANIXTEVKSV----EMHHEALQEAVPG 456
+ VY I G GTV G++E G+LK G I + T VKSV E + + +A PG
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
Query: 457 DNVGFNVKNVSVKELRRVMLLVTPKTTH 540
D +G ++ + K++RR +L+ H
Sbjct: 318 DQLGVLLRGLGPKDVRRGCVLLPQGHKH 345
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/94 (25%), Positives = 47/94 (50%)
Frame = +1
Query: 247 PATARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIXTEVKSVEMH 426
P+ R + P+R + + Y +GTV +G++E+G ++ G +V P +V +
Sbjct: 330 PSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWAD 387
Query: 427 HEALQEAVPGDNVGFNVKNVSVKELRRVMLLVTP 528
+ V GDN+ F +K + EL+ ++ +P
Sbjct: 388 DVETERVVAGDNIKFKLKGIEENELQGGFIICSP 421
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +2
Query: 2 KMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPST--KMPW 172
KMD + E RF+EI+ +++ +++K+G+NP + +VP SG G + + T + W
Sbjct: 256 KMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEGNW 315
Query: 173 FKG 181
+ G
Sbjct: 316 YSG 318
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +1
Query: 274 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----IXTEVKSVEMHHEALQ 441
P + D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVG 431
Query: 442 EAVPGDNVGFNVKNVSVKELRRVMLLVTPK 531
G + F +K + K++R+ M+LV PK
Sbjct: 432 IVKCGQSASFALKKIPKKDVRKGMVLVDPK 461
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +1
Query: 274 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----IXTEVKSVEMHHEALQ 441
P + D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVG 432
Query: 442 EAVPGDNVGFNVKNVSVKELRRVMLLVTPK 531
G + F +K + K++R+ M+LV PK
Sbjct: 433 IVKCGQSASFALKKIPKKDVRQGMVLVDPK 462
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/63 (41%), Positives = 31/63 (49%)
Frame = +3
Query: 48 KSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENAS 227
+S + P +SRR T Q L D TETTC C GSRDG + RK L E S
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 228 LKL 236
+L
Sbjct: 212 SRL 214
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/61 (31%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 KMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 178
K+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+
Sbjct: 317 KLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYD 371
Query: 179 G 181
G
Sbjct: 372 G 372
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 262 PTDKPLRLPLQDVYKIGGIGTVPVGRVETG 351
P+D PLR+ + DV K+ V G++E+G
Sbjct: 388 PSDGPLRIGISDVLKVASNQLVVSGKIESG 417
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/61 (31%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 KMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 178
K+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+
Sbjct: 335 KLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYD 389
Query: 179 G 181
G
Sbjct: 390 G 390
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 262 PTDKPLRLPLQDVYKIGGIGTVPVGRVETG 351
P+D PLR+ + DV K+ V G++E+G
Sbjct: 406 PSDGPLRIGISDVLKVASNQLVVSGKIESG 435
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 283 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PANIXTEVKSVEMHHEALQEAVPG 456
+P+ I G GTV VG +E GVLK G V + T +++ ++++E G
Sbjct: 242 MPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAG 301
Query: 457 DNVGFNVKNVSVKELRRVM 513
D+ G + V ++R M
Sbjct: 302 DHCGVLCRGVKGDTVKRGM 320
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 283 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PANIXTEVKSVEMHHEALQEAVPG 456
+P+ I G GTV VG +E GVLK G V + T +++ ++++E G
Sbjct: 242 MPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAG 301
Query: 457 DNVGFNVKNVSVKELRRVM 513
D+ G + V ++R M
Sbjct: 302 DHCGVLCRGVKGDTVKRGM 320
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 283 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIXTEVKSVEMHHEALQEAVPGDN 462
+ + + I G GTV G V GVL+ T + F N VK++E + + + G
Sbjct: 204 IAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGAR 263
Query: 463 VGFNV 477
F V
Sbjct: 264 AAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 283 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIXTEVKSVEMHHEALQEAVPGDN 462
+ + + I G GTV G V GVL+ T + F N VK++E + + + G
Sbjct: 163 IAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGAR 222
Query: 463 VGFNV 477
F V
Sbjct: 223 AAFLV 227
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = -3
Query: 527 GVTSNITRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVXMLAGAKTTMVPGFNTP 348
G + ++ T T T T +PGT + + T+ GA TT PG
Sbjct: 2008 GYNTPFDLNSNFTTTTTTSTTTTTPGTGPTVTA---AQTTTTTPSTPGAGTTGTPGTGPT 2064
Query: 347 VSTLPT-GTVPIPPILYTSCRGRRRGL 270
V+ PT G PI+ T+ RG+
Sbjct: 2065 VTAAPTNGISTTQPIITTTKGAEGRGV 2091
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 279 QGLVSGAGSGRMASRASM-RHFPSALPSLRSTCHPLNQGIL 160
QGL+ G G+ +RAS + FP ++ L CHP IL
Sbjct: 793 QGLLKDYGIGKTMARASRDKMFPQSILRLVYRCHPTTTKIL 833
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = -3
Query: 527 GVTSNITRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVXMLAGAKTTMVPGFNTP 348
G + ++ T T T T +PGT + + T+ GA TT PG
Sbjct: 2008 GYNTPFDLNSNFTTTTTTSTTTTTPGTGPTVTA---AQTTTTTPSTPGAGTTGTPGTGPT 2064
Query: 347 VSTLPT-GTVPIPPILYTSCRGRRRGL 270
V+ PT G PI+ T+ RG+
Sbjct: 2065 VTAAPTNGISTTQPIITTTKGAEGRGV 2091
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = -3
Query: 527 GVTSNITRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVXMLAGAKTTMVPGFNTP 348
G + ++ T T T T +PGT + + T+ GA TT PG
Sbjct: 2008 GYNTPFDLNSNFTTTTTTSTTTTTPGTGPTVTA---AQTTTTTPSTPGAGTTGTPGTGPT 2064
Query: 347 VSTLPT-GTVPIPPILYTSCRGRRRGL 270
V+ PT G PI+ T+ RG+
Sbjct: 2065 VTAAPTNGISTTQPIITTTKGAEGRGV 2091
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 66 PHTSRRLATTQLLSLSCPFLD 128
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 66 PHTSRRLATTQLLSLSCPFLD 128
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 66 PHTSRRLATTQLLSLSCPFLD 128
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 66 PHTSRRLATTQLLSLSCPFLD 128
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -3
Query: 479 FTLKPTLSPG-TASWRASWCISTDLTSVXMLAGAKTTMVPGFN--TPVSTLPTGTVPIPP 309
FT +S + S R S +S D T V + + VP + VST PT +PP
Sbjct: 38 FTQSSAVSESQSTSERTSRSVSPDSTPVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPP 97
Query: 308 ILY 300
I Y
Sbjct: 98 ITY 100
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 650 CRQCGQCGNPTLVCNRLRLTRMVKHNDLSCKICST 546
C CG+ G+P+ + +T+++K + C C +
Sbjct: 279 CHDCGRSGHPSCLNFNQNVTKIIKRSGWQCLECKS 313
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical
protein F22E10.2 protein.
Length = 1324
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +1
Query: 430 EALQEAVPGDNVGFNVKNVSVKELRRVMLLVTPKTTHLRVLQILQLKSLCLTIL 591
E +Q+ V GD +G ++ +S+ V+ L+ L +L ++ + ++C+T+L
Sbjct: 204 ERIQDGV-GDKLGVLIRGISMVIASVVISLIYEWRLALMMLGLIPVSTICMTLL 256
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = -3
Query: 521 TSNITRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVXMLAGAKTTMVPGFNTPVS 342
TS +T S + + + T+ + ++ ++ ST TS + + T P T +
Sbjct: 300 TSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLST 359
Query: 341 TLPTGTVP 318
++PT T P
Sbjct: 360 SIPTTTTP 367
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = -3
Query: 521 TSNITRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVXMLAGAKTTMVPGFNTPVS 342
TS +T S + + + T+ + ++ ++ ST TS + + T P T +
Sbjct: 300 TSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLST 359
Query: 341 TLPTGTVP 318
++PT T P
Sbjct: 360 SIPTTTTP 367
>AL132864-2|CAB60592.1| 201|Caenorhabditis elegans Hypothetical
protein Y53H1A.3 protein.
Length = 201
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Frame = -2
Query: 402 SXDVGGGKDNNGTWF--QHTS---FNSADGHGTNTTDFVYVLQGKTQGLVSGAGSGR--- 247
S +V GK ++G W Q TS F DGH T T V+ +G G R
Sbjct: 97 SLNVAAGKTHSGVWLGAQRTSATAFRWTDGHTTGTEAMVFGPGQPDNDHGAGRGPQRCLQ 156
Query: 246 -MASRASMRHFPSALPSLRS 190
MA S + P L +L+S
Sbjct: 157 LMALTPSYWNIPGHLINLKS 176
>Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical
protein T13H5.6 protein.
Length = 475
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = -3
Query: 311 PILYTSCRGRRRGLSVGRAVAGWHRELQ*GIFRQLCLPYAPPAIP*TKAFWLK-APTCCL 135
P+LYT +++ + W+ G+F ++ PY +P + +F+L+ P C
Sbjct: 57 PLLYTLLSSNALSVTINVLIFLWYI----GVFGEISRPYLSAGLPYSSSFFLRFTPYCDA 112
Query: 134 R---AIQKWARKR 105
+KW +K+
Sbjct: 113 EFDVIRKKWVQKQ 125
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 437 RASWCISTDLTSVXMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILY 300
R + +S++ +S+ L + ++ TP TGT PIP +++
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVF 259
>U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical
protein T10E9.2 protein.
Length = 720
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 357 ETRYHCCLCPRQHXY 401
E ++ CCLCPR H +
Sbjct: 346 EFKWRCCLCPRAHAH 360
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 437 RASWCISTDLTSVXMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILY 300
R + +S++ +S+ L + ++ TP TGT PIP +++
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVF 259
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,843,774
Number of Sequences: 27780
Number of extensions: 404282
Number of successful extensions: 1286
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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