Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30292
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    67   2e-12
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    29   0.73 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   2.9  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.9  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     27   2.9  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   3.9  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.0  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 29/58 (50%), Positives = 39/58 (67%)
 Frame = +2

Query: 38  EMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVKQFHTTGLVWSGKGSA 211
           EM D+ QFY NRV+K++K KD   +EW R+++ LL++L  YVK    TGL WS K  A
Sbjct: 220 EMKDSSQFYANRVMKEFKGKDDLQIEWVRSYLTLLTELITYVKTHFKTGLTWSTKQDA 277



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +2

Query: 509 KWLIEYQKGNSNLVVENADMNNVVYMFRCRDSALTVRGK 625
           KW +E Q  N ++V+++ ++N+ V +F C +  + ++GK
Sbjct: 404 KWFVENQVDNHSIVLDSVELNHSVQIFGCSNCTIIIKGK 442



 Score = 35.5 bits (78), Expect = 0.006
 Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +3

Query: 339 LTSSLRKVTPDMQTHKNPTLRQ-GPAPF---KATSAAGHKP 449
           +TS LRKV     THKNP LR+ GP P    K  S+A  KP
Sbjct: 347 ITSGLRKVDKSEMTHKNPNLRKTGPTPGPKPKIKSSAPSKP 387


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 556 LDHQIGVALLVLDKPLLPSRVKTGGLSSCPAPGCGSGLC 440
           LD  I  AL  ++ P +P RVK   +       CG+G C
Sbjct: 27  LDEAIAAALQKIEVPSIPRRVKVYEMEDENWVDCGTGYC 65


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 360 VTPDMQTHKNPTLRQGPAPFKATSAAGH 443
           VTP    +K P+    PAP   TS+A H
Sbjct: 178 VTPSASLYKQPSFNSNPAPI-TTSSATH 204


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 366 PDMQTHKNPTLRQGPAPFKATSAAGHKPLPQPGAGQLDK 482
           P+      P +   P+P  A +     P+P  G+  +DK
Sbjct: 295 PETSKTSTPNMSNNPSPRVANTVVSPAPIPTIGSATIDK 333


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 260 CCQTWTSPTCRSMTAALSSPKSIEANIN-*LLAQSDAGHAD 379
           CC T   PTCR+  A+L+         N  +L Q D G  D
Sbjct: 23  CCLTLEKPTCRTCLASLTPEGRKNNRFNTSVLLQVDDGSGD 63


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/55 (21%), Positives = 29/55 (52%)
 Frame = +1

Query: 364 RRTCRPTRIRLSVKAQRRSKRRRPPDTSRCHSPAPDN*TSRPSSLGTAKVAYRVP 528
           R++ +P+  + + +  R+SK   P D S  H+P+     +    L +++++ + P
Sbjct: 157 RKSKKPSASKDTSRGVRKSKAGAPSDPSSVHAPSSLEKPAGTGDLPSSEISTKAP 211


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 390 PTLR-QGPAPFK-ATSAAGHKPLPQPGAGQLDKPPV 491
           PTL  QG  P +     A HKPLP+P      + PV
Sbjct: 701 PTLHPQGQLPIQNVEQRATHKPLPRPPVQVETREPV 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,485
Number of Sequences: 5004
Number of extensions: 48826
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)