Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30292
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    72   4e-13
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    72   4e-13
AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical ...    58   7e-09
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical...    32   0.29 
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    30   1.6  
Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = +2

Query: 35   KEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVKQFHTTGLVW-SGKGSA 211
            KE  +A QFY N +L+++KE D  HVEW +AW  +  ++Q +V+Q HTTGLVW S  G+A
Sbjct: 928  KEFIEAAQFYINPILREFKETDPRHVEWTKAWKAVFEEMQKFVRQVHTTGLVWNSAPGAA 987



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 25/50 (50%), Positives = 29/50 (58%)
 Frame = +3

Query: 339  LTSSLRKVTPDMQTHKNPTLRQGPAPFKATSAAGHKPLPQPGAGQLDKPP 488
            +TS L+KVT DMQTHKNP LR G A   A  A+     P   A  + KPP
Sbjct: 1052 VTSRLKKVTADMQTHKNPNLR-GTAVVPAAGASQGGSSPAKPAAPVRKPP 1100



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +2

Query: 491  LHSGRQKWLIEYQKGNSNLVVENADMNNVVYMFRCRDSALTVRGK 625
            L +G+Q W++EY   + N+V++ AD    VY++RC +S + V GK
Sbjct: 1104 LENGKQ-WIVEYFVNDPNIVLDVADKKQTVYIYRCENSVIKVNGK 1147


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = +2

Query: 35  KEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVKQFHTTGLVW-SGKGSA 211
           KE  +A QFY N +L+++KE D  HVEW +AW  +  ++Q +V+Q HTTGLVW S  G+A
Sbjct: 167 KEFIEAAQFYINPILREFKETDPRHVEWTKAWKAVFEEMQKFVRQVHTTGLVWNSAPGAA 226



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 25/50 (50%), Positives = 29/50 (58%)
 Frame = +3

Query: 339 LTSSLRKVTPDMQTHKNPTLRQGPAPFKATSAAGHKPLPQPGAGQLDKPP 488
           +TS L+KVT DMQTHKNP LR G A   A  A+     P   A  + KPP
Sbjct: 291 VTSRLKKVTADMQTHKNPNLR-GTAVVPAAGASQGGSSPAKPAAPVRKPP 339



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +2

Query: 491 LHSGRQKWLIEYQKGNSNLVVENADMNNVVYMFRCRDSALTVRGK 625
           L +G+Q W++EY   + N+V++ AD    VY++RC +S + V GK
Sbjct: 343 LENGKQ-WIVEYFVNDPNIVLDVADKKQTVYIYRCENSVIKVNGK 386


>AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical
           protein C18E3.6 protein.
          Length = 457

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 25/59 (42%), Positives = 35/59 (59%)
 Frame = +2

Query: 35  KEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVKQFHTTGLVWSGKGSA 211
           K+  D   FY NR+L + K K+  H EW ++  +L+  L  YV+Q HTTGLVW+    A
Sbjct: 150 KDAIDTSVFYLNRILMEHKGKNDFHSEWAKSIKELMLSLHEYVRQHHTTGLVWNSDPGA 208



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 512 WLIEYQKGNSNLVVENADMNNVVYMFRCRDSALTVRGK 625
           W +++Q GN N VVE  D    +Y+++C DS + ++GK
Sbjct: 310 WKVDHQVGNKNAVVEVTDKKESIYIYKCNDSIIKIKGK 347



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +3

Query: 342 TSSLRKVTPDMQTHKNPTLRQ 404
           TS L+KVTP+MQTHKNP LR+
Sbjct: 255 TSRLKKVTPEMQTHKNPVLRE 275


>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
            protein T05H4.3 protein.
          Length = 1152

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 85   LERERQDPRRVVPRLGPTAVRFASVRQTVSHNRTCVVWQGQCWXXPTASPGRTS-PSAPV 261
            LE+ + +    +  +  +  R +SVR+  S N T ++    C      + G+TS    P 
Sbjct: 846  LEKSQMEELSQIRLIDLSKNRLSSVREISSFNITHLILNNNCLKSIAVNDGQTSLQPFPY 905

Query: 262  LPDVDFSNLSLDDRSAL 312
            L ++D SN S+ + S L
Sbjct: 906  LENLDISNNSISNTSIL 922


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 6/111 (5%)
 Frame = +3

Query: 174 TQQDLCGLARAVLVXPHRLPREDFPXXXXXXXXXXXXXXXXXPQRSLRRNQSRRTLTSSL 353
           T++D  GL  +  +  ++ P  DF                           S  ++    
Sbjct: 344 TEKDSFGLLNSTKIHRNQFPTSDFETIAQATAERKKALLGAQGAAGASEPGSSSSIHGKK 403

Query: 354 RKVTPDMQTH--KNPTLRQGPAPFKATSAAGHK----PLPQPGAGQLDKPP 488
            K   ++QT   K  ++++  A  +A ++AG      P P P A +L  PP
Sbjct: 404 GKTVRELQTEMMKGESVKEKAARMRAEASAGRSQAPGPAPAPAASELQDPP 454


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 399  RQGPAPFKATSAAGHKPLPQPGAGQLDKPPVFTRDGKSGLSSTKRAT 539
            R+  A  ++ S+A ++P+    AG++ K P+ + +      S  RAT
Sbjct: 1502 RRRSARAQSVSSASNEPVASTSAGEIKKDPILSSNNGGNAQSAPRAT 1548


>Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.2 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = -2

Query: 626 TSRGPSGRSRDNGTCTQRCSCPRSRPPNWSCPFGTR*ATFAV-----PSEDGR 483
           TS  P  R +DN        CPR +P    CP G    T ++     P  DGR
Sbjct: 119 TSGSPGPRGQDNHQVHAPIQCPRQQPGCVKCPRGPAGPTGSIGQAGRPGPDGR 171


>U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical
           protein C18B2.6 protein.
          Length = 599

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 364 RRTCRPTRIRLSVKAQRRSKRRRPPDTSRCHS-PAPDN 474
           RR CR TR     + +R  +RRR   TS   S P P N
Sbjct: 538 RRRCRETREAHEARQRRDMRRRRRNSTSHSRSTPKPHN 575


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 385 RIRLSVKAQRRSKRRR-PPDTSRCHSPAPDN*TSRPSSLGTAKVAYRVPK 531
           R R S + +R  +RRR P  +SR  SP P     R  S   A VA + P+
Sbjct: 489 RRRQSPQRRRSPRRRRSPSSSSRSRSPPPPPRRPRQDSEQQAPVAVKSPE 538



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 330 RRTLTSSLRKVTPDMQTHKNPTLRQGPAPFKATSAAGHKPLP 455
           RR  + S  K  P  +  ++P+  + PAP +A S +   P P
Sbjct: 303 RRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAP 344


>AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3a protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = +3

Query: 384 KNPTLRQGPAPFKATSAAGHKPL--PQPGAGQL---DKPPVFTRDGKSGLSSTKRATP 542
           K+   R  PAP    S  G  PL  P PGAG +    +P   T    S LSS   A P
Sbjct: 162 KSAVSRPRPAP--GASTGGLVPLLPPPPGAGSMIRNSRPSTTTTTASSSLSSAFAAPP 217


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 611  SGRSRDNGTCTQRCSCPRSRPPN-WSCPFGTR*ATFAVPSEDG 486
            SGR     TC+    CP++   N + CP GT+ A   V  + G
Sbjct: 942  SGRCASGYTCSNNVCCPQTTTTNPFVCPDGTQAAGGCVNGQCG 984


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 611 SGRSRDNGTCTQRCSCPRSRPPN-WSCPFGTR*ATFAVPSEDG 486
           SGR     TC+    CP++   N + CP GT+ A   V  + G
Sbjct: 284 SGRCASGYTCSNNVCCPQTTTTNPFVCPDGTQAAGGCVNGQCG 326


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 611 SGRSRDNGTCTQRCSCPRSRPPN-WSCPFGTR*ATFAVPSEDG 486
           SGR     TC+    CP++   N + CP GT+ A   V  + G
Sbjct: 284 SGRCASGYTCSNNVCCPQTTTTNPFVCPDGTQAAGGCVNGQCG 326


>U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical
           protein F41F3.3 protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -3

Query: 541 GVALLVLDKPLLPSRVKTGGLSSCPAP----GCGSGLCPA 434
           G+AL  L    LPS    GG    PAP    GCG G+ PA
Sbjct: 46  GLALPQLPPLSLPSLGGGGGCCPPPAPACGGGCGGGVAPA 85


>Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical
           protein R10E12.1d protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +3

Query: 351 LRKVTPDMQTHKNPTLRQGPAPFKATSAAGHKPLPQPGAGQLDKPPVFTRDGKSGLSSTK 530
           L K TP MQT   P+ R   A     +A    P P+P A  ++ P    R  +S + +T 
Sbjct: 343 LAKPTP-MQTPMTPSFRGTNAAQSPANAPPRPPPPRPAAPSVESPIPPPRTQQS-MQATP 400

Query: 531 RATP 542
            A P
Sbjct: 401 GAPP 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,544
Number of Sequences: 27780
Number of extensions: 310761
Number of successful extensions: 1194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)