Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30292
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.6  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   7.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 127  SAAPLYVGLVFLFPILEHAVSVELAGVIHFLNVRSR 20
            S  P Y  +  + P++   V++ +A VI  L  RSR
Sbjct: 1603 STVPFYADVKVMLPLIVATVALVVAVVIVALRWRSR 1638


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 127  SAAPLYVGLVFLFPILEHAVSVELAGVIHFLNVRSR 20
            S  P Y  +  + P++   V++ +A VI  L  RSR
Sbjct: 1599 STVPFYADVKVMLPLIVATVALVVAVVIVALRWRSR 1634


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 377 LHVRRHFAQGAS*CSPRLISAKRALRSSSDKLEKSTSGSTGAE 249
           LH +    Q  S  SP+ ++ +    SSS  L+    G   A+
Sbjct: 349 LHCKPELGQSQS--SPKFVARREESNSSSPSLDLGKEGGLEAQ 389


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 376 RPTRIRLSVKAQRRSKRRRPPDTSRCHSPAP 468
           RPTR+R   K +      RP    +   P P
Sbjct: 27  RPTRLRREAKPEAEPGNNRPVYIPQPRPPHP 57


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 550 GRERGHEQRC 579
           G +RG+EQRC
Sbjct: 96  GAQRGNEQRC 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,998
Number of Sequences: 438
Number of extensions: 3804
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)