Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30292
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    66   2e-11
At1g32190.1 68414.m03959 expressed protein                             29   1.9  
At3g10070.1 68416.m01207 transcription initiation factor IID (TF...    28   4.4  
At1g19350.5 68414.m02408 brassinosteroid signalling positive reg...    28   4.4  
At1g19350.4 68414.m02407 brassinosteroid signalling positive reg...    28   4.4  
At1g19350.3 68414.m02405 brassinosteroid signalling positive reg...    28   4.4  
At1g19350.1 68414.m02406 brassinosteroid signalling positive reg...    28   4.4  
At1g07970.1 68414.m00868 expressed protein                             28   5.8  
At5g64230.1 68418.m08068 expressed protein                             27   7.7  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    27   7.7  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    27   7.7  

>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 3/193 (1%)
 Frame = +2

Query: 56  QFYTNRVLKDWKEKDKTHVEWCRAWVQL-LSDLQAYVKQFHTTGLVW--SGKGSAXXXXX 226
           +FY N+VL +++ KD  HVEW +A  +L L  L+ YVK  +  G VW  SGK ++     
Sbjct: 173 EFYNNKVLVEYRNKDADHVEWAKALKELYLPGLREYVKSHYPLGPVWNASGKPASAPAKG 232

Query: 227 XXXXXXXXXXXCCQTWTSPTCRSMTAALSSPKSIEANIN*LLAQSDAGHADPQESDSPSR 406
                           +S    S           +   +  +        D  ++ + + 
Sbjct: 233 PPGAPAPPPAPLFSAESSKPSSSSNQKQGMSAVFQQLSSGAVTSGLRKVTDDMKTKNRAD 292

Query: 407 PSAVQSDVGXXXXXXXXXXXXXXXXXXXLHSGRQKWLIEYQKGNSNLVVENADMNNVVYM 586
            S   S V                    L  GR KW +E Q G  +LV+   D    VY+
Sbjct: 293 RSGAVSAVEKETRTSKPAFSKTGPPKMELQMGR-KWAVENQIGKKDLVISECDSKQSVYI 351

Query: 587 FRCRDSALTVRGK 625
           + C+DS L ++GK
Sbjct: 352 YGCKDSVLQIQGK 364


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 593 NGTCTQRCSCPRSRPPNWSCPFG 525
           +G C   CSCP+ R P  SC  G
Sbjct: 298 SGLCRPSCSCPKPRCPKPSCSCG 320


>At3g10070.1 68416.m01207 transcription initiation factor IID
           (TFIID) subunit A family protein similar to hypothetical
           protein GB:CAB10099 [Schizosaccharomyces pombe];
           contains Pfam profile PF03847: Transcription initiation
           factor TFIID subunit A
          Length = 539

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +3

Query: 366 PDMQTHKNPTLRQGPAPFKATSAAGHKPLPQ-PGAGQLDKPPVFTR 500
           P   T   PT    P+P    S+    P PQ P       PP +TR
Sbjct: 25  PSTLTQIQPTPSTNPSPSSVVSSIPSSPAPQSPSLNPNPNPPQYTR 70


>At1g19350.5 68414.m02408 brassinosteroid signalling positive
           regulator, putative similar to BZR1 protein [Arabidopsis
           thaliana] gi|20270971|gb|AAM18490
          Length = 335

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 426 TSAAGHKPLPQPGAGQLDKPPVFTRDGKSGLSST 527
           T   GHKPLP   AG   +   ++   +S LSST
Sbjct: 85  TYRKGHKPLPGDMAGSSSRATPYSSHNQSPLSST 118


>At1g19350.4 68414.m02407 brassinosteroid signalling positive
           regulator, putative similar to BZR1 protein [Arabidopsis
           thaliana] gi|20270971|gb|AAM18490
          Length = 335

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 426 TSAAGHKPLPQPGAGQLDKPPVFTRDGKSGLSST 527
           T   GHKPLP   AG   +   ++   +S LSST
Sbjct: 85  TYRKGHKPLPGDMAGSSSRATPYSSHNQSPLSST 118


>At1g19350.3 68414.m02405 brassinosteroid signalling positive
           regulator, putative similar to BZR1 protein [Arabidopsis
           thaliana] gi|20270971|gb|AAM18490
          Length = 357

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 426 TSAAGHKPLPQPGAGQLDKPPVFTRDGKSGLSST 527
           T   GHKPLP   AG   +   ++   +S LSST
Sbjct: 107 TYRKGHKPLPGDMAGSSSRATPYSSHNQSPLSST 140


>At1g19350.1 68414.m02406 brassinosteroid signalling positive
           regulator, putative similar to BZR1 protein [Arabidopsis
           thaliana] gi|20270971|gb|AAM18490
          Length = 335

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 426 TSAAGHKPLPQPGAGQLDKPPVFTRDGKSGLSST 527
           T   GHKPLP   AG   +   ++   +S LSST
Sbjct: 85  TYRKGHKPLPGDMAGSSSRATPYSSHNQSPLSST 118


>At1g07970.1 68414.m00868 expressed protein
          Length = 693

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 420 KATSAAGHKPLPQPGAGQLDKPPVFTRDGKSGLSSTKRATPI 545
           K T +AG    P P  G        T  G +G S   R+TP+
Sbjct: 273 KITESAGKMRTPPPTVGSFAMASPSTVGGSTGASGATRSTPL 314


>At5g64230.1 68418.m08068 expressed protein
          Length = 379

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 62  YTNRVLKDWKEKDKTHVEWCRAWVQLL 142
           YT+    DW + + ++V WC +  QLL
Sbjct: 350 YTHCASSDWPDLNGSYVRWCHSSRQLL 376


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 300 PQRSLRRNQSRRTLTSSLRKVTPDMQTHKNPTLRQGPAPFKATSAAGHKPLPQPGAG 470
           P RS+ R++SR    SS    +  + +      R+G +P    +  G  P P P  G
Sbjct: 30  PSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKSP-AGPARRGRSPPPPPSKG 85


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 300 PQRSLRRNQSRRTLTSSLRKVTPDMQTHKNPTLRQGPAPFKATSAAGHKPLPQPGAG 470
           P RS+ R++SR    SS    +  + +      R+G +P    +  G  P P P  G
Sbjct: 30  PSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKSP-AGPARRGRSPPPPPSKG 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,085
Number of Sequences: 28952
Number of extensions: 299416
Number of successful extensions: 1127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)