Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30290
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    30   0.015
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   0.44 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +2

Query: 11  DDYGNYTCGLKNQTG--HIKAWM-VTGNVHAKMTKDANVVE-GQNIKITCKLIGKPYSEV 178
           +D G Y C + N  G   ++  + VT  + AK+      ++ G+    TC   G P   +
Sbjct: 300 EDSGKYLCVVNNSVGGESVETVLTVTAPLKAKIEPQVQTIDFGRPATFTCNFEGNPIKTI 359

Query: 179 TWKYKKDELDNGTDV 223
           +W      +D+   V
Sbjct: 360 SWLKDGHPIDHNEAV 374



 Score = 26.2 bits (55), Expect = 0.25
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +2

Query: 20  GNYTCGLKNQTGHIKAWMVTG--NVHAKMT---KDANVVEGQNIKITCKLIGKPYSEVTW 184
           GNYTC L + +  +  +  +   NV  +      D    +G +  + CK  G P   VTW
Sbjct: 674 GNYTC-LASNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTW 732

Query: 185 K 187
           K
Sbjct: 733 K 733



 Score = 25.8 bits (54), Expect = 0.33
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
 Frame = +2

Query: 8   EDDYGNYTCGLKNQTGHIKAWM---VTGNVHAKMTKDA----NVVEGQNIKITCKLIGKP 166
           ++D G Y C ++N     +A     + G       + A     V  G ++ + C   G P
Sbjct: 382 KEDKGMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFNEETVQPGNSVFLKCIASGNP 441

Query: 167 YSEVTWKYKKDELDN 211
             E+TW+     L N
Sbjct: 442 TPEITWELYGRRLSN 456



 Score = 25.4 bits (53), Expect = 0.44
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = +2

Query: 11  DDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVT 181
           +D G Y C   ++ G   H     V G    +  +   +V G  + + C   G P   V 
Sbjct: 484 NDGGLYRCVASSKVGSADHSARINVYGLPFVRSMEKQAIVAGGTLIVHCPFAGHPVDSVV 543

Query: 182 WK 187
           W+
Sbjct: 544 WE 545


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 231 TALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFCPSTTLASLVILAC 88
           +AL SV +  S  L  H T E+ LP+ L  +   CP   L  +  L C
Sbjct: 345 SALASVIMGLSPILGRHNTIEHLLPLFLTQLKDECPEVRLNIISNLDC 392


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 434  EHHDLRADAEEGPERVVHALDPE 366
            +HH L A  EEG +   +  D E
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSE 1196


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 434  EHHDLRADAEEGPERVVHALDPE 366
            +HH L A  EEG +   +  D E
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSE 1196


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 434  EHHDLRADAEEGPERVVHALDPE 366
            +HH L A  EEG +   +  D E
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSE 1196


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 434  EHHDLRADAEEGPERVVHALDPE 366
            +HH L A  EEG +   +  D E
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSE 1196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,125
Number of Sequences: 336
Number of extensions: 1801
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)