Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30290
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      27   2.5  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   2.5  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   7.7  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 189 YFHVTSEYG-LPINLQVILMFCPSTTLASLVILACTFPVTIQ--ALICPVWFLR 37
           Y HV S Y  + + L +I+    +    + V++A  F   I   + ICP+WF++
Sbjct: 247 YIHVFSFYADMLMTLVLIISAYIALNAVASVVIAFVFLSLIFFISFICPIWFIK 300


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 126 PSTTLASLVILACTFPVTIQALICPVWFL 40
           PST LAS  I +   P +I+  + P W L
Sbjct: 294 PSTILASQTIFSEEHPSSIEPFVAPYWTL 322


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 38  LKNQTGHIKAWMVTGNVHAKMTKDANVVE 124
           +K    H +AW   G +H  +  ++ VVE
Sbjct: 321 VKENPQHFEAWKWLGRIHTLLGNESRVVE 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,292
Number of Sequences: 5004
Number of extensions: 27091
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)