Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30290
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0716 - 13264983-13265195,13265219-13265968,13266307-132664...    30   2.0  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   6.0  
08_02_0855 - 21913291-21913347,21914117-21914211,21915077-219151...    28   7.9  

>02_02_0716 -
           13264983-13265195,13265219-13265968,13266307-13266463,
           13266542-13266582
          Length = 386

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 184 EVQEGRVGQRHGRERGAGQSRAAGK 258
           E Q   VG  HGR+RG G+ +  GK
Sbjct: 269 EAQANVVGNSHGRKRGHGEKKGKGK 293


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 8   EDDYGNYTCGLKNQTGHIKAW 70
           ED +G +T  +K +  H+KAW
Sbjct: 631 EDKHGGFTAKMKKRIKHVKAW 651


>08_02_0855 -
           21913291-21913347,21914117-21914211,21915077-21915165,
           21915449-21915507,21917872-21918160,21918307-21918398,
           21918495-21918621,21918730-21918811,21919265-21919541,
           21919647-21919812,21920519-21920847
          Length = 553

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 240 LPSTALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFC 127
           +P+  LTS        +Y+H +S YGL + L   +  C
Sbjct: 445 MPNPLLTSEKFIPIPIVYYHCSSSYGLSLRLLAQVNLC 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,769,266
Number of Sequences: 37544
Number of extensions: 208430
Number of successful extensions: 905
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)