Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30290
(685 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 31 0.010
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 27 0.22
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 27 0.22
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 24 1.2
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 31.1 bits (67), Expect = 0.010
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 20 GNYTCGLKNQTGHIK-AWMVTGNVHAKMT---KDANVVEGQNIKITCKLIGKPYSEVTWK 187
G Y C +N G + +T NV + D +G + ++ CK G P +VTWK
Sbjct: 654 GEYVCTAENAAGTASHSTTLTVNVPPRWILEPTDKAFAQGSDARVECKADGFPKPQVTWK 713
Score = 29.9 bits (64), Expect = 0.024
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +2
Query: 2 SNEDDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYS 172
++ +D G Y C ++ G H V G + +V G+ +++TC + G P
Sbjct: 461 THTNDGGLYKCIAASKVGSAEHSARLNVYGLPFIRHMDKKAIVAGETLRVTCPVAGYPIE 520
Query: 173 EVTWK 187
+ W+
Sbjct: 521 SIVWE 525
Score = 28.3 bits (60), Expect = 0.072
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +2
Query: 11 DDYGNYTCGLKNQTG--HIKAWM-VTGNVHAKMTKDANVVE-GQNIKITCKLIGKPYSEV 178
+D G Y C + N G ++ + VT + A++ ++ G+ TC + G P V
Sbjct: 280 EDSGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCNVRGNPIKTV 339
Query: 179 TW 184
+W
Sbjct: 340 SW 341
Score = 28.3 bits (60), Expect = 0.072
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 128 QNIKITCKLIGKPYSEVTWKYK 193
+++K+ C +G P EVTWK +
Sbjct: 1292 EDVKLPCLAVGVPAPEVTWKVR 1313
Score = 25.4 bits (53), Expect = 0.51
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Frame = +2
Query: 8 EDDYGNYTCGLKNQTGHIKAWM---VTGNVHAKMTKDANVVE----GQNIKITCKLIGKP 166
++D G Y C ++N +A + G + A E G ++ + C G P
Sbjct: 362 KEDKGMYQCFVRNDQESAQATAELKLGGRFEPPQIRQAFAEETLQPGPSMFLKCVASGNP 421
Query: 167 YSEVTWKYKKDELDN 211
E+TW+ L N
Sbjct: 422 TPEITWELDGKRLSN 436
Score = 21.4 bits (43), Expect = 8.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 14 DYGNYTCGLKNQTGH 58
D G Y+C ++N GH
Sbjct: 1340 DAGEYSCYVENTFGH 1354
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 26.6 bits (56), Expect = 0.22
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Frame = +2
Query: 5 NEDDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTK---DANVVEGQNIKITCKLIGKP 166
N +D G Y C ++ G A + GN + + + G + + C G P
Sbjct: 390 NREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNP 449
Query: 167 YSEVTW 184
+VTW
Sbjct: 450 TPQVTW 455
Score = 24.2 bits (50), Expect = 1.2
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Frame = +2
Query: 14 DYGNYTCGLKNQTGHI-----KAWMVTGNVHAKMTKDANVVEGQNIKITCKL-IGKPYSE 175
D G YTC +N+ GH ++ + T + EG + C + G P
Sbjct: 583 DAGVYTCSARNKQGHSARRSGDVAVIVPPIIEPFTFQEGLSEGMRTRTVCGVAAGDPPLT 642
Query: 176 VTW 184
++W
Sbjct: 643 ISW 645
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 14 DYGNYTCGLKNQTGHIK 64
D G+YTC ++N G+ K
Sbjct: 1378 DGGDYTCQVENAQGNDK 1394
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 26.6 bits (56), Expect = 0.22
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Frame = +2
Query: 5 NEDDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTK---DANVVEGQNIKITCKLIGKP 166
N +D G Y C ++ G A + GN + + + G + + C G P
Sbjct: 390 NREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNP 449
Query: 167 YSEVTW 184
+VTW
Sbjct: 450 TPQVTW 455
Score = 24.2 bits (50), Expect = 1.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 14 DYGNYTCGLKNQTGHI--KAWMVTGNVHAKM---TKDANVVEGQNIKITCKL 154
D G YTC +N+ GH ++ V V K+ T D ++ G+ +TC +
Sbjct: 583 DAGVYTCSARNKQGHSARRSGDVAVIVPPKISPFTADRDLHLGERTTLTCSV 634
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 14 DYGNYTCGLKNQTGHIK 64
D G+YTC ++N G+ K
Sbjct: 1374 DGGDYTCQVENAQGNDK 1390
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 24.2 bits (50), Expect = 1.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +2
Query: 125 GQNIKITCKLIGKPYSEVTWKYKKDELD 208
G N++I C + G P + W+ +L+
Sbjct: 325 GDNVEIKCDVTGTPPPPLVWRRNGADLE 352
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,866
Number of Sequences: 438
Number of extensions: 2190
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -