Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30290
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29560.1 68417.m04215 expressed protein                             32   0.41 
At1g63530.1 68414.m07182 hypothetical protein                          29   3.8  
At5g64440.1 68418.m08095 amidase family protein low similarity t...    28   6.6  
At3g30710.1 68416.m03897 hypothetical protein similar to Arginin...    28   6.6  
At3g04350.1 68416.m00460 expressed protein                             27   8.8  

>At4g29560.1 68417.m04215 expressed protein 
          Length = 493

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -3

Query: 446 YDGAEHHDLRADAEEGPERVVHALDPERDVGGRAPGRAALVQAGVGASAFCSTSTVLS 273
           ++G E   ++ D EE    VVH +D    VG +A      V      S F STS VL+
Sbjct: 190 WNGKEITQIKEDMEEDQREVVHNIDHTMTVGLQAHDHEMAVNLRAQISNFESTSEVLT 247


>At1g63530.1 68414.m07182 hypothetical protein
          Length = 499

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 122 EGQNIKITCKLIGKPYSEVTWKYKKDELDNGT 217
           EGQNI      + K + E+ W+Y K E   G+
Sbjct: 279 EGQNISSFKPYVDKSHDELRWEYYKKEAKGGS 310


>At5g64440.1 68418.m08095 amidase family protein low similarity to
           enantiomerase-selective amidase [Rhodococcus sp.]
           GI:152052; contains Pfam profile PF01425: Amidase
          Length = 607

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 374 DPERDVGGRAPGRAALVQAGVGASA 300
           DP+R  GG + G AA+V AG+ ++A
Sbjct: 273 DPKRYTGGSSSGSAAIVAAGLCSAA 297


>At3g30710.1 68416.m03897 hypothetical protein similar to
           Arginine-tRNA-protein transferase 1 (EC
           2.3.2.8)(R-transferase 1) (Arginyltransferase 1)
           (Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus
           musculus}; similar to MRP homologs in mycobacteria
           (SP:P53382), which belong to the MR?/NBP35 family of
           ATP-binding proteins.
          Length = 523

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 8   EDDYG--NYTCGLKNQTGHIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVT 181
           ED+ G  N  C +K Q   +    V   V A    D  V EG+ I IT KLI   Y  ++
Sbjct: 420 EDEAGLANLLCHIKGQNYQVPG--VKNMVEAATYADMVVKEGREIAITNKLIALYYQHLS 477


>At3g04350.1 68416.m00460 expressed protein
          Length = 567

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 201 SSFLYFHVTSEYGLPINLQVILMFCPSTTLASLVILACTFPVT 73
           SS LY HV    G      V+ +FCP    A+L I   T P+T
Sbjct: 345 SSELYVHVKPALGGTFTDIVMWIFCPFNGPATLKIGLFTLPMT 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,775,356
Number of Sequences: 28952
Number of extensions: 150164
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)