Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30287
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 128 6e-31
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 122 2e-29
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 77 2e-15
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 65 6e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 56 4e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 1e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 53 3e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 4e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 49 4e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 47 1e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 7e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 45 7e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 42 5e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 37 0.001
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 36 0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 36 0.002
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 36 0.003
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 36 0.003
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 34 0.013
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 34 0.013
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 33 0.023
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 30 0.21
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.37
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 0.65
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 0.86
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 1.5
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.0
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 26 2.6
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 2.6
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 3.5
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 3.5
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 3.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.5
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 25 4.6
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 25 8.0
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 128 bits (308), Expect = 6e-31
Identities = 59/76 (77%), Positives = 70/76 (92%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
V+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALIL PTRELAQQIQKVV+ALGD +N +C
Sbjct: 59 VLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVEC 118
Query: 436 HACIGGTNVREDIRQL 483
HACIGGT VR+D+ L
Sbjct: 119 HACIGGTLVRDDMAAL 134
Score = 80.6 bits (190), Expect = 1e-16
Identities = 34/53 (64%), Positives = 45/53 (84%)
Frame = +2
Query: 95 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQR IMP + R
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGER 57
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 122 bits (295), Expect = 2e-29
Identities = 58/76 (76%), Positives = 66/76 (86%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
VIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL PTRELA QIQ VV+ALGDH+N +C
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQC 120
Query: 436 HACIGGTNVREDIRQL 483
HACIGGT+V DI++L
Sbjct: 121 HACIGGTSVGNDIKKL 136
Score = 59.7 bits (138), Expect = 2e-10
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +2
Query: 95 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q R I+ +GR
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGR 59
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 76.6 bits (180), Expect = 2e-15
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG H+N K
Sbjct: 84 ILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKV 143
Query: 436 HACIGGTNVREDIRQL 483
GGT +R+DI +L
Sbjct: 144 MVTTGGTTLRDDIIRL 159
Score = 44.8 bits (101), Expect = 7e-06
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 47 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 214
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 215 IQQRXIMPCIQGR 253
IQ+ I + GR
Sbjct: 70 IQEESIPIALSGR 82
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 64.9 bits (151), Expect = 6e-12
Identities = 29/64 (45%), Positives = 45/64 (70%)
Frame = +1
Query: 241 HPRTRVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDH 420
+P +I Q+QSGTGKTA F++++L ++D S+ + QA+ L P+RELA+QI VV +G +
Sbjct: 151 NPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY 210
Query: 421 LNAK 432
K
Sbjct: 211 TEVK 214
Score = 41.5 bits (93), Expect = 7e-05
Identities = 16/33 (48%), Positives = 27/33 (81%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRXI 232
V++F+++ LK ELL+GIY+ F+KPS IQ++ +
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 55.6 bits (128), Expect = 4e-09
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 250 TRVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHL-N 426
T V+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +L +
Sbjct: 89 TDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPD 148
Query: 427 AKCHACIGGTNVREDI 474
+ GG N+++D+
Sbjct: 149 VRTAVFYGGINIKQDM 164
Score = 33.9 bits (74), Expect = 0.013
Identities = 19/36 (52%), Positives = 20/36 (55%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQG 250
F D LK ELLR I GFE PS +QQ I I G
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILG 88
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.0 bits (124), Expect = 1e-08
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +1
Query: 259 IAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKCH 438
I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +LN K
Sbjct: 48 IGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHA 107
Query: 439 ACIGGTN-VREDI 474
+GG + +R+ I
Sbjct: 108 LIVGGMDMIRQSI 120
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 52.8 bits (121), Expect = 3e-08
Identities = 25/69 (36%), Positives = 43/69 (62%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
VI AQ+G+GKTA F++ ++Q++ + A++L PTRELA QI + A+G + +
Sbjct: 86 VIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRS 145
Query: 436 HACIGGTNV 462
+GG ++
Sbjct: 146 VVIVGGMDM 154
Score = 28.3 bits (60), Expect = 0.65
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +2
Query: 8 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIY 187
S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 4 SEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACE 62
Query: 188 AYGFEKPSAIQQRXI 232
GF+ P+ IQQ I
Sbjct: 63 KLGFKTPTPIQQEAI 77
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.8 bits (111), Expect = 4e-07
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILXPTRELAQQIQKVVIALGD 417
++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+ +
Sbjct: 54 LVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL----E 109
Query: 418 HLNAKCHACIGGTNV 462
L A C I NV
Sbjct: 110 KLTAFCSKHIRFINV 124
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 137 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGRVL 259
+TF D NL L R I+ FEKP+++Q I ++G+ L
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDL 54
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 48.8 bits (111), Expect = 4e-07
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIREC--QALILXPTRELAQQIQKVVIALGDHLNA 429
V+ A++G+GKTA F I +++ + +++ +ALIL P RELA Q KVV +
Sbjct: 109 VVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDL 168
Query: 430 KCHACIGGTNVREDIRQL 483
+ A +GG ++ E L
Sbjct: 169 RSVAIVGGVSLEEQFSLL 186
Score = 34.7 bits (76), Expect = 0.007
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
F M L + LLR I+ GF+ P+ IQ++ I ++GR
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 47.2 bits (107), Expect = 1e-06
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI---DTSIRECQALILXPTRELAQQIQKVVIALGDHLN 426
++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V + +
Sbjct: 299 IVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTD 358
Query: 427 AKCHACIGGTNVREDIRQL 483
CIGG +++ ++L
Sbjct: 359 IMVCLCIGGLSLKLQEQEL 377
Score = 32.7 bits (71), Expect = 0.030
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 140 TFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
+F MNL +L+G+ GFE P+ IQ + I + G+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGK 297
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.8 bits (101), Expect = 7e-06
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI--DTSIRECQALILXPTRELAQQIQKVVIALGDHLNA 429
+I +A +G+GKT F I IL+ + + QAL++ PTRELA QI + + N
Sbjct: 162 IIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNI 221
Query: 430 KCHACIGGTNVREDIRQL 483
+ + GG V++ R L
Sbjct: 222 RVMSITGGLAVQKQQRLL 239
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 44.8 bits (101), Expect = 7e-06
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQID----TSIRECQALILXPTRELAQQIQKVVIALGDHL 423
++ A++G+GKT F + +++ + TS+ AL++ PTRELA Q + ++ +G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLH 138
Query: 424 NAKCHACIGGTNVREDIRQL 483
+ IGG N +E+ +L
Sbjct: 139 SFSAGLIIGGNNYKEEKERL 158
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.9 bits (94), Expect = 5e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Frame = +1
Query: 247 RTRVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILXPTRELAQQIQKVV 402
R +I A++G+GKTA F I ++ I + E A++L PTRELAQQIQ
Sbjct: 286 RKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEG 345
Query: 403 IALGDHLNAKCHACIGGTNVREDIRQL 483
+ L +C + +GG E Q+
Sbjct: 346 NKFAEPLGFRCVSVVGGHAFEEQSFQM 372
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 37.1 bits (82), Expect = 0.001
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQID---TSIRECQALILXPTRELAQQIQKVVIALGDHLN 426
V+ A++G+GKT F I LQ ++ + + L++ PTRELA Q + + +L N
Sbjct: 205 VVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTN 264
Query: 427 AKCHACIGGTNVREDIR 477
K GG E R
Sbjct: 265 LKAVVVYGGAPKSEQAR 281
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 36.3 bits (80), Expect = 0.002
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTS--IRECQ---ALILXPTRELAQQIQKVVIALGDH 420
VI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 458 VIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKL 517
Query: 421 LNAKCHACIGGTNVREDIRQL 483
LN + GG +++ I L
Sbjct: 518 LNIRACCAYGGAPIKDQIADL 538
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 119 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
D + V ++ L + + I + G+EKP++IQ + I GR
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGR 456
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 36.3 bits (80), Expect = 0.002
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
+E F D+ L E + + I GFE + IQ+R I P + GR
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGR 127
Score = 34.7 bits (76), Expect = 0.007
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILXPTRELAQQIQKVVIALGDHL 423
V+ A++G+GKT F +I +L + R +I+ PTRELA QI V L +
Sbjct: 129 VLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYH 188
Query: 424 NAKCHACIGGTNVREDIRQL 483
+ IGG N R + +L
Sbjct: 189 HQTFGIVIGGANRRAEADKL 208
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 35.9 bits (79), Expect = 0.003
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSI-RECQALILXPTRELAQQIQK 396
++A A +G+GKT + ILQ++ + +A+I+ PTREL +QI +
Sbjct: 86 LLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 35.9 bits (79), Expect = 0.003
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Frame = +1
Query: 265 QAQSGTGKTATFSISILQQI-------DTSIRECQALILXPTRELAQQIQKVVIALGD-- 417
+AQ+G+GKT + + I+Q++ T A+I+ PTREL QQI V L +
Sbjct: 184 EAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNP 243
Query: 418 --HLNAKCHACIGGTNVRED 471
H C+ IGG + +
Sbjct: 244 LSHWIVSCNV-IGGEKKKSE 262
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.9 bits (74), Expect = 0.013
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +1
Query: 229 NNALHPRTRVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILXPTRELAQQIQ 393
N + QA++GTGKT F + + + + + ++IL PTRELA QI
Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIF 129
Query: 394 KVVIALGDHLNAKCHACIGG-TNVRED 471
+ L + IGG + +RE+
Sbjct: 130 EEARKLTYGTGIRVSYAIGGNSKMREE 156
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 33.9 bits (74), Expect = 0.013
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI---DTSIRECQALILXPTRELAQQIQKV 399
++ +A +G+GKT + + ++ DT ALI+ PTRELA QI V
Sbjct: 41 LVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.1 bits (72), Expect = 0.023
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 202 KTFCNPATRNNALHPRTRVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELA 381
KT+ + A N L VI + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 382 QQIQKVVI 405
Q +K +I
Sbjct: 370 QDQKKSLI 377
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 313 LQQIDTSIRECQALILXPTRELAQQIQK 396
LQ I I++CQ L PT++L Q +K
Sbjct: 201 LQGIKEYIKKCQLTELDPTQQLLTQSRK 228
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.9 bits (64), Expect = 0.21
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILXPTRELAQQIQKVVIALGDH 420
++ + +G+GKT ++ + + I+ L+L PTRELA QIQ+ G
Sbjct: 162 MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKS 221
Query: 421 LNAKCHACIGGTNVREDIRQL 483
+ GG IR L
Sbjct: 222 SRIRNTCVYGGVPRGPQIRDL 242
Score = 28.3 bits (60), Expect = 0.65
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
V TF++ +L+ + GFE P+ IQQ+ + GR
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGR 160
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.1 bits (62), Expect = 0.37
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 110 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
LDT+W V + NL+ + + I + F PS I + MP + R
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDR 231
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 0.65
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LILXPTRELA 381
++A AQ+G+GKTA F IL Q R +A LIL PTREL
Sbjct: 209 LMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELV 268
Query: 382 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 483
QI + + A GG ++R IRQ+
Sbjct: 269 CQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQI 302
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 0.86
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 107 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 199
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 309 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 410
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 84 DLREWTLGHLTPT 122
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 2.0
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +1
Query: 277 GTGKTATFSISILQQI----DTSIRECQALILXP-TRELAQQIQ 393
G G T F+ SILQQI + SI +C + P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 2.6
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +1
Query: 211 CNPATRNNALHPRTRVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQI 390
C A N + R+ +G+GKTA F I Q LIL +ELA Q
Sbjct: 34 CLSACLNAFDEGKRRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQA 93
Query: 391 QK 396
K
Sbjct: 94 LK 95
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 2.6
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 243 SKDACYRSSPVRNWKNCYFLYIDSTTNRYKHS*MSSFDPG-SHKRAGPTNSEG 398
S+ A Y S+P +KN IDS + R+ HS SF P SH + + +G
Sbjct: 128 SEKASYTSTP---YKNVAPKVIDSPSARHMHSNSPSFPPSQSHTSSYDQSPKG 177
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 388 IQKVVIALGDHLNAKCHACIGGTNVRED 471
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 483 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 382
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 104 QGPFPEVHRNYLDPSMAHFWNPLANL 27
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 113 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGRVLS 262
DTDWD +V + D++L+ RGI A G + + + P + + ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMN 663
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 4.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 423 QVITKSYHHLLNLLGQLSCGXQDQ 352
+++ KSYH+L N QLS +DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = +2
Query: 119 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGRVLSLKPSQELEK 289
D+D++ + +M +L + +K +Q R + PC+ V + LEK
Sbjct: 218 DFDKLSCSSPEMVATTQLPSQCIPHLVQKSYYLQNRHVFPCVHWEVFDSRKDYSLEK 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,031
Number of Sequences: 5004
Number of extensions: 44137
Number of successful extensions: 184
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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