Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30287
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       39   2e-05
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 39.1 bits (87), Expect = 2e-05
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
 Frame = +1

Query: 256 VIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILXPTRELAQQIQKVVIA 408
           ++A AQ+G+GKTA F++ I+     + +D  +     E Q +I+ PTREL  QI + ++ 
Sbjct: 236 LMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVK 295

Query: 409 LGDHLNAKCHACIGGTNV 462
              +   K     GGT+V
Sbjct: 296 FSLNSILKTVVAYGGTSV 313



 Score = 28.7 bits (61), Expect = 0.035
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 128 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGRVL 259
           Q +E+F+   L+  +L  I   G++KP+ +Q+  +   + GR L
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDL 236


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 SQELEKLLLSLYRFYNKSIQAFVNV 346
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 463 GHWCHQCKHGI*HSS 419
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
 Frame = +1

Query: 157 PQRRIVERHIRLWF*KTFC----NPATRNNAL-HPRTRVIAQAQSGTGKTATFSISILQQ 321
           P +++    I  WF  TFC    N AT  NA+ H  +      +    K A +++  ++ 
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEF 580

Query: 322 ID-TSIRECQALILXPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 462
                 R C      P++  +  +       GD LNA   A +G +N+
Sbjct: 581 YKRRPQRACSTTGGVPSK--SPTLTHSPTMYGDALNANLQAALGDSNM 626


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 441 LHWWHQCP 464
           LH WH CP
Sbjct: 470 LHHWHHCP 477


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 206 PSAIQQRXIMPCIQGRVLSLKPSQELEKLLLSLYRFYNKSI 328
           PS        P  Q  + +L+P    ++     YR YN ++
Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPAL 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,033
Number of Sequences: 438
Number of extensions: 3231
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)