Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30287
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 111 2e-25
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 109 7e-25
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 108 2e-24
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 100 4e-22
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 91 5e-19
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 72 2e-13
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 72 2e-13
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 71 5e-13
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 71 5e-13
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 66 2e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 57 5e-09
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 57 5e-09
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 57 5e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 57 5e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 56 1e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 54 7e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 52 3e-07
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 46 1e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 46 2e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 45 2e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 45 2e-05
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 44 7e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 43 1e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 42 3e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 42 3e-04
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 41 4e-04
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 41 4e-04
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 41 4e-04
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 41 4e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 40 9e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 40 9e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 40 9e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 40 9e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 40 9e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 39 0.002
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 39 0.002
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 39 0.002
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 38 0.005
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 36 0.011
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 36 0.011
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 36 0.014
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 36 0.019
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 36 0.019
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 35 0.033
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 35 0.033
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 34 0.044
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 34 0.058
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 33 0.077
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 33 0.077
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 33 0.10
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 33 0.10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 33 0.13
At3g10020.1 68416.m01202 expressed protein 33 0.13
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 32 0.24
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 31 0.54
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 29 1.7
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 29 1.7
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 29 2.2
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 28 2.9
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 28 3.8
At1g76010.1 68414.m08825 expressed protein 28 3.8
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 27 5.1
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 27 5.1
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 27 6.7
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa... 27 8.9
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 111 bits (268), Expect = 2e-25
Identities = 53/76 (69%), Positives = 63/76 (82%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
VI QAQSGTGKTATF +LQQ+D S+ +CQAL+L PTRELAQQI+KV+ ALGD+L K
Sbjct: 79 VIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 138
Query: 436 HACIGGTNVREDIRQL 483
HAC+GGT+VRED R L
Sbjct: 139 HACVGGTSVREDQRIL 154
Score = 67.3 bits (157), Expect = 5e-12
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +2
Query: 116 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQG 250
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG 76
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 109 bits (263), Expect = 7e-25
Identities = 52/76 (68%), Positives = 62/76 (81%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
VI QAQSGTGKTATF +LQQ+D S+ +CQAL+L PTRELAQQI+KV+ ALGD+L K
Sbjct: 81 VIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKA 140
Query: 436 HACIGGTNVREDIRQL 483
AC+GGT+VRED R L
Sbjct: 141 QACVGGTSVREDQRVL 156
Score = 67.3 bits (157), Expect = 5e-12
Identities = 30/48 (62%), Positives = 39/48 (81%)
Frame = +2
Query: 107 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQG 250
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKG 78
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 108 bits (260), Expect = 2e-24
Identities = 51/76 (67%), Positives = 62/76 (81%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
VI QAQSGTGKTATF +LQQ+D ++ +CQAL+L PTRELAQQI+KV+ ALGD+ K
Sbjct: 79 VIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKV 138
Query: 436 HACIGGTNVREDIRQL 483
HAC+GGT+VRED R L
Sbjct: 139 HACVGGTSVREDQRIL 154
Score = 68.1 bits (159), Expect = 3e-12
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +2
Query: 116 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQG 250
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG 76
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 100 bits (240), Expect = 4e-22
Identities = 48/76 (63%), Positives = 59/76 (77%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
VIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL PTRELA Q +K + A+G H N +
Sbjct: 75 VIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQA 134
Query: 436 HACIGGTNVREDIRQL 483
HACIGG +V EDIR+L
Sbjct: 135 HACIGGNSVGEDIRKL 150
Score = 68.5 bits (160), Expect = 2e-12
Identities = 28/46 (60%), Positives = 38/46 (82%)
Frame = +2
Query: 116 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQR +MP +QGR
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGR 73
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 90.6 bits (215), Expect = 5e-19
Identities = 41/76 (53%), Positives = 57/76 (75%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
VIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L P+RELA Q +K + A+G H N +
Sbjct: 62 VIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQA 121
Query: 436 HACIGGTNVREDIRQL 483
HACIGG ++ EDI++L
Sbjct: 122 HACIGGKSIGEDIKKL 137
Score = 56.4 bits (130), Expect = 1e-08
Identities = 20/40 (50%), Positives = 34/40 (85%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
+++FDDM + +++LRG+Y YG++KPS IQQR ++P ++GR
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR 60
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 71.7 bits (168), Expect = 2e-13
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL +
Sbjct: 171 ILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQV 230
Query: 436 HACIGGTNVREDIRQL 483
GGT++++DI +L
Sbjct: 231 MVTTGGTSLKDDIMRL 246
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
F+D LK ELL GIY GFE+PS IQ+ I + GR
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGR 169
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 71.7 bits (168), Expect = 2e-13
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL +
Sbjct: 171 ILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQV 230
Query: 436 HACIGGTNVREDIRQL 483
GGT++++DI +L
Sbjct: 231 MVTTGGTSLKDDIMRL 246
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
F+D LK ELL GIY GFE+PS IQ+ I + GR
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGR 169
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 70.5 bits (165), Expect = 5e-13
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +LN +
Sbjct: 164 ILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQV 223
Query: 436 HACIGGTNVREDIRQL 483
GGT++R+DI +L
Sbjct: 224 MVTTGGTSLRDDIMRL 239
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQG 250
F+D LK +LL+GIY GFEKPS IQ+ I + G
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG 161
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 70.5 bits (165), Expect = 5e-13
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +LN +
Sbjct: 164 ILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQV 223
Query: 436 HACIGGTNVREDIRQL 483
GGT++R+DI +L
Sbjct: 224 MVTTGGTSLRDDIMRL 239
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQG 250
F+D LK +LL+GIY GFEKPS IQ+ I + G
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG 161
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 65.7 bits (153), Expect = 2e-11
Identities = 33/76 (43%), Positives = 48/76 (63%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
++A+A++GTGKT F I L++ID QA+IL PTRELA Q +V L +L +
Sbjct: 194 ILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEV 253
Query: 436 HACIGGTNVREDIRQL 483
GGT++R+DI +L
Sbjct: 254 MVTTGGTSLRDDIMRL 269
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQG 250
F+D LK +LLRGIY GFEKPS IQ+ I + G
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTG 191
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 57.2 bits (132), Expect = 5e-09
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHL-NAK 432
VI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K
Sbjct: 86 VICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTK 145
Query: 433 CHACIGGTNVR 465
GG N++
Sbjct: 146 VSVFYGGVNIK 156
Score = 33.9 bits (74), Expect = 0.058
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQG 250
F D LK ELLR I GFE PS +Q I I G
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG 83
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 57.2 bits (132), Expect = 5e-09
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHL-NAK 432
VI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K
Sbjct: 3 VICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTK 62
Query: 433 CHACIGGTNVR 465
GG N++
Sbjct: 63 VSVFYGGVNIK 73
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 57.2 bits (132), Expect = 5e-09
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHL-NAK 432
VI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K
Sbjct: 86 VICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTK 145
Query: 433 CHACIGGTNVR 465
GG N++
Sbjct: 146 VSVFYGGVNIK 156
Score = 33.9 bits (74), Expect = 0.058
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQG 250
F D LK ELLR I GFE PS +Q I I G
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG 83
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 57.2 bits (132), Expect = 5e-09
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = +1
Query: 244 PRTRVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALG 414
P +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G
Sbjct: 130 PHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 33.9 bits (74), Expect = 0.058
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 143 FDDMNLKEELLRGIYA-YGFEKPSAIQ 220
F+D+NL EL++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 56.4 bits (130), Expect = 1e-08
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKVVIALGDHLNAKC 435
V+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG LN +C
Sbjct: 98 VLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRC 157
Query: 436 HACIGGTNV 462
+GG ++
Sbjct: 158 SVIVGGMDM 166
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 53.6 bits (123), Expect = 7e-08
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILXPTRELAQQIQKVVIALGDHLNA 429
V+A A++G+GKTA F I +L+++ + + +ALIL PTR+LA+Q K LG +
Sbjct: 68 VVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDL 127
Query: 430 KCHACIGGTNVREDIRQL 483
+ +GG ++ + +L
Sbjct: 128 RVSLLVGGDSMEDQFEEL 145
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 51.6 bits (118), Expect = 3e-07
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +1
Query: 262 AQAQSGTGKTATFSISILQQI---DTSIRECQALILXPTRELAQQIQKVVIALGDHLNAK 432
A A +G+GKTA F++ L+++ + + LIL PTRELA QI ++ L + K
Sbjct: 209 ASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIK 268
Query: 433 CHACIGGTNVRE 468
C +GG +VRE
Sbjct: 269 CGLIVGGLSVRE 280
Score = 33.1 bits (72), Expect = 0.10
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 137 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGRVL 259
+TF ++NL LLR G++KP+ IQ I + GR L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDL 207
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 46.0 bits (104), Expect = 1e-05
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI------DTSIRECQALILXPTRELAQQIQKVVIALGD 417
+I +A++GTGKT F I I+ +I + Q L+L PTRELA+Q++K
Sbjct: 156 MIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAP 215
Query: 418 HLNAKCHACIGGTNVREDIRQL 483
L+ C GGT + + +R+L
Sbjct: 216 SLDTIC--LYGGTPIGQQMREL 235
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 45.6 bits (103), Expect = 2e-05
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI------DTSIRECQALILXPTRELAQQIQKVVIALGD 417
+I +A++GTGKT F I I+ +I R L+L PTRELA+Q++K
Sbjct: 144 MIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAP 203
Query: 418 HLNAKCHACIGGTNVREDIRQL 483
L+ C GGT + + +RQL
Sbjct: 204 SLDTIC--LYGGTPIGQQMRQL 223
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 45.2 bits (102), Expect = 2e-05
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILXPTRELAQQIQKV 399
VI AQ+G+GKT F+I ILQ + + + + A +L PTRELA QI +
Sbjct: 49 VIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQ 108
Query: 400 VIALGDHLNAKCHACIGG 453
ALG ++ +C +GG
Sbjct: 109 FEALGADISLRCAVLVGG 126
Score = 33.5 bits (73), Expect = 0.077
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +2
Query: 125 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
++VV+TF ++ ++EEL++ G++ PS IQ + ++G+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 45.2 bits (102), Expect = 2e-05
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILXPTRELAQQIQKVVIAL 411
VI A++G+GKTA F + +L I + E + A+++ PTRELAQQI++ +
Sbjct: 353 VIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF 412
Query: 412 GDHLNAKCHACIGGTNVRE 468
+L + + +GG ++ E
Sbjct: 413 AHYLGFRVTSIVGGQSIEE 431
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 134 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
+ ++++ L ELL+ + G++KPS IQ I +Q R
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 43.6 bits (98), Expect = 7e-05
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +1
Query: 259 IAQAQSGTGKTATFSISILQQIDTSIRECQALILXPTRELAQQIQKV 399
I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 117 ILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 10/70 (14%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQID------TSIREC----QALILXPTRELAQQIQKVVI 405
+IA+A++GTGKT F I I++++ T+ R + L+L PTRELA+Q++K +
Sbjct: 142 IIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK 201
Query: 406 ALGDHLNAKC 435
+L+ C
Sbjct: 202 ESAPYLSTVC 211
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 41.5 bits (93), Expect = 3e-04
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILXPTRELAQQIQKVVI 405
++A AQ+G+GKTA F I+ I D I + A+IL PTRELA QI
Sbjct: 186 LMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEAR 245
Query: 406 ALGDHLNAKCHACIGGTNVREDIRQL 483
K GGT V + IR+L
Sbjct: 246 KFSYQTGVKVVVAYGGTPVNQQIREL 271
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 41.5 bits (93), Expect = 3e-04
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILXPTRELAQQIQKVVI 405
++A AQ+G+GKTA F I+ I D ++ + A+IL PTRELA QI
Sbjct: 199 LMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAK 258
Query: 406 ALGDHLNAKCHACIGGTNVREDIRQL 483
K GGT + + +R+L
Sbjct: 259 KFSYQTGVKVVVAYGGTPINQQLREL 284
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 110 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGRVL 259
++T D V V TF +++L E L I + KP+ +Q+ I ++GR L
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDL 199
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILXPTRELAQQIQKVVIALGDHL 423
++A A++G+GKT + I LQ+I R L+L PTRELA QIQ+ + G
Sbjct: 198 IVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSS 257
Query: 424 NAKCHACIGGTNVREDIRQL 483
C GG +R L
Sbjct: 258 RISCTCLYGGAPKGPQLRDL 277
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 140 TFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
+F+ ELLR + + GF P+ IQ + +QGR
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGR 196
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILXPTRELAQQIQKVVIALGDHL 423
++A A++G+GKT + I LQ+I R L+L PTRELA QIQ+ + G
Sbjct: 198 IVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSS 257
Query: 424 NAKCHACIGGTNVREDIRQL 483
C GG +R L
Sbjct: 258 RISCTCLYGGAPKGPQLRDL 277
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 140 TFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
+F+ ELLR + + GF P+ IQ + +QGR
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGR 196
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILXPTRELAQQIQKVVIALGDHL 423
++A A++G+GKT + I LQ+I R L+L PTRELA QIQ+ + G
Sbjct: 198 IVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSS 257
Query: 424 NAKCHACIGGTNVREDIRQL 483
C GG +R L
Sbjct: 258 RISCTCLYGGAPKGPQLRDL 277
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 140 TFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
+F+ ELLR + + GF P+ IQ + +QGR
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGR 196
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 41.1 bits (92), Expect = 4e-04
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Frame = +1
Query: 259 IAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILXPTRELAQQIQKVVIALGDHL 423
I A++G+GKT F + +L+ I D E L++ PTREL QQI + L
Sbjct: 570 IGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPL 629
Query: 424 NAKCHACIGGTNVREDIRQL 483
+C GG+ V + I +L
Sbjct: 630 GIRCVPVYGGSGVAQQISEL 649
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 39.9 bits (89), Expect = 9e-04
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Frame = +1
Query: 235 ALHPRTRVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILXPTRELAQQ 387
A+ R V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204
Query: 388 IQKVVIALGDHLNAKCHACIGGTNVR 465
+ +V ++ H + GG+ +R
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIR 230
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 39.9 bits (89), Expect = 9e-04
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILXPTRELAQQIQKVVI 405
++A AQ+G+GKTA F I+ I D + + A+IL PTRELA QI
Sbjct: 191 LMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAK 250
Query: 406 ALGDHLNAKCHACIGGTNVREDIRQL 483
K GGT + + +R+L
Sbjct: 251 KFSYQTGVKVVVAYGGTPIHQQLREL 276
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 39.9 bits (89), Expect = 9e-04
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILXPTRELAQQIQKVVI 405
++A AQ+G+GKTA F I+ I D + + A+IL PTRELA QI
Sbjct: 191 LMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAK 250
Query: 406 ALGDHLNAKCHACIGGTNVREDIRQL 483
K GGT + + +R+L
Sbjct: 251 KFSYQTGVKVVVAYGGTPIHQQLREL 276
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 39.9 bits (89), Expect = 9e-04
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILXPTRELAQQIQKVVIAL 411
++A A +G+GKTA+F + I+ + T R A++L PTREL Q++ L
Sbjct: 150 LLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKML 209
Query: 412 GDHLNAKCHACIGG 453
G L K +GG
Sbjct: 210 GKGLPFKTALVVGG 223
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 39.9 bits (89), Expect = 9e-04
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILXPTRELAQQIQKVVIAL 411
++A A +G+GKTA+F + I+ + T R A++L PTREL Q++ L
Sbjct: 13 LLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKML 72
Query: 412 GDHLNAKCHACIGG 453
G L K +GG
Sbjct: 73 GKGLPFKTALVVGG 86
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILXPTRELAQQIQKVVIALGDHL 423
++A A++G+GKT + I LQ+I R L+L PTRELA QIQ + G
Sbjct: 269 IVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSS 328
Query: 424 NAKCHACIGGTNVREDIRQL 483
C GG ++++
Sbjct: 329 KISCACLYGGAPKGPQLKEI 348
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 38.7 bits (86), Expect = 0.002
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +1
Query: 259 IAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILXPTRELAQQIQKVVIALGDHL 423
I A++G+GKT F + +L+ I D E L++ PTREL QQI + L
Sbjct: 437 IGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKAL 496
Query: 424 NAKCHACIGGTNVREDIRQL 483
C GG+ V + I +L
Sbjct: 497 GIICVPVYGGSGVAQQISEL 516
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 38.7 bits (86), Expect = 0.002
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILXPTRELAQQIQKVVIALGDHL 423
++A A++G+GKT + I +L+ R LIL PTRELA QIQ + G
Sbjct: 475 IVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSS 534
Query: 424 NAKCHACIGGTNVREDIRQL 483
C GG +++L
Sbjct: 535 RISCTCLYGGAPKGPQLKEL 554
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 37.5 bits (83), Expect = 0.005
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILXPTRELAQQIQKVVIALGDHL 423
V+ A++G+GKT F ++ +L + S R +++ PTRELA Q + V L H
Sbjct: 129 VLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHH 188
Query: 424 NAKCHACIGGTNVREDIRQL 483
+ IGG N R + +++
Sbjct: 189 SQTVSMVIGGNNRRSEAQRI 208
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 140 TFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
TFD ++L E+ I GF+ + IQ I P ++G+
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 36.3 bits (80), Expect = 0.011
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILXPTRELAQQIQKVVIALGDH 420
+I A++G+GKT + + L + R Q LIL PTRELA QIQ+ G
Sbjct: 205 LIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLR 264
Query: 421 LNAKCHACIGGTNVREDIRQL 483
+ GG IR L
Sbjct: 265 SGVRSTCIYGGAPKGPQIRDL 285
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 119 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGRVL 259
D + ++ F D N + +L I GF +P+ IQ + ++GR L
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDL 205
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 36.3 bits (80), Expect = 0.011
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILXPTRELAQQIQKVVIALGDH 420
+I A++G+GKT + + L + R Q LIL PTRELA QIQ+ G
Sbjct: 205 LIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLR 264
Query: 421 LNAKCHACIGGTNVREDIRQL 483
+ GG IR L
Sbjct: 265 SGVRSTCIYGGAPKGPQIRDL 285
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 119 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGRVL 259
D + ++ F D N + +L I GF +P+ IQ + ++GR L
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDL 205
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 35.9 bits (79), Expect = 0.014
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILXPTRELA-QQIQKVVIA 408
++A+A++GTGKT F + ++ + D L++ PTRELA Q + I
Sbjct: 120 ILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANIL 179
Query: 409 LGDHLNAKCHACIGGTNVREDIRQL 483
L H + IGGT + + R+L
Sbjct: 180 LKYHPSIGVQVVIGGTKLPTEQRRL 204
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 35.5 bits (78), Expect = 0.019
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 6/58 (10%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDT--SIRECQ----ALILXPTRELAQQIQKVVIAL 411
V+A+A++G+GKT + + +LQ++ + S+ + + A IL P+REL QQ+ V +L
Sbjct: 86 VVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSL 143
Score = 33.5 bits (73), Expect = 0.077
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +2
Query: 125 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGRVLSLKPSQELEKLLLSL 304
++ ++F+++ L L+R + G EKP+ IQQ I ++G+ + + K L L
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 305 YRFYNKSIQA 334
K A
Sbjct: 102 LPLLQKLFSA 111
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 35.5 bits (78), Expect = 0.019
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILXPTRELAQQIQKVVIALGDH 420
+I A++G+GKT ++ + + ++ L+L PTRELA QIQ+ G
Sbjct: 139 LIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSS 198
Query: 421 LNAKCHACIGGTNVREDIRQL 483
K GG +R L
Sbjct: 199 SKIKTTCIYGGVPKGPQVRDL 219
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 34.7 bits (76), Expect = 0.033
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILXPTRELAQQ-IQKVVIA 408
V+A+A++GTGKT F + ++ + D AL++ PTRELA Q +
Sbjct: 94 VLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTL 153
Query: 409 LGDHLNAKCHACIGGTNV 462
L H + IGGT +
Sbjct: 154 LKYHPSIGVQVVIGGTRL 171
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 34.7 bits (76), Expect = 0.033
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILXPTRELAQQ-IQKVVIA 408
V+A+A++GTGKT F + ++ + D+ L++ PTRELA Q +
Sbjct: 422 VLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTL 481
Query: 409 LGDHLNAKCHACIGGTNVREDIRQL 483
L H + IGGT + + R++
Sbjct: 482 LKYHPSIGVQVVIGGTKLPTEQRRM 506
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 34.3 bits (75), Expect = 0.044
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Frame = +1
Query: 259 IAQAQSGTGKTATFSISILQQIDTSIRECQA---------LILXPTRELAQQIQKVVIA- 408
+ +A++GTGK+ F + ++ + ++ + LIL PTRELA QI A
Sbjct: 416 LVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKAL 475
Query: 409 LGDHLNAKCHACIGGTNVREDIRQL 483
L +H IGGT R D ++L
Sbjct: 476 LKNHDGIGVQTLIGGTRFRLDQQRL 500
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 33.9 bits (74), Expect = 0.058
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILXPTRELAQQIQKVVIALGDHL 423
++ A++G+GKT F I IL+++ + +I+ PTRELA Q V+ +G
Sbjct: 111 ILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFH 170
Query: 424 NAKCHACIGG 453
IGG
Sbjct: 171 KFSAGLLIGG 180
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 33.5 bits (73), Expect = 0.077
Identities = 17/75 (22%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 235 ALHPRTRVIAQAQSGTGKTATFSISILQQIDTSIREC-QALILXPTRELA-QQIQKVVIA 408
+L+ R +I+ + +++ L+++ +++EC +A+ + P+ A Q++ + +
Sbjct: 241 SLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLR 300
Query: 409 LGDHLNAKCHACIGG 453
LG+ NA+ H C G
Sbjct: 301 LGEAENARRHICFSG 315
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 33.5 bits (73), Expect = 0.077
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Frame = +1
Query: 259 IAQAQSGTGKTATFSISILQQIDTSIRECQ---------ALILXPTRELAQQIQ---KVV 402
+ +A++GTGK+ F + ++ + ++ + ALIL PTRELA QI K +
Sbjct: 369 LVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKAL 428
Query: 403 IALGDHLNAKCHACIGGTNVREDIRQL 483
+ D + + IGGT + D ++L
Sbjct: 429 LKFHDGIGVQ--TLIGGTRFKLDQQRL 453
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 33.1 bits (72), Expect = 0.10
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILXPTRELAQQIQKVVIALGDH 420
VI A++G+GKTA F + ++ I ++ + +I PTRELA QI
Sbjct: 268 VIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKA 327
Query: 421 LNAKCHACIGGTNVREDIRQL 483
+ A GG + E ++L
Sbjct: 328 YGLRVSAVYGGMSKHEQFKEL 348
Score = 31.9 bits (69), Expect = 0.24
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 119 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRXIMPCIQGR 253
D + V+TF+D +++ I +EKP+AIQ + + + GR
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGR 266
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 33.1 bits (72), Expect = 0.10
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILXPTRELAQQIQKVVIA 408
+I A++G+GKT F I + + ++ L+L PTRELA QI V+
Sbjct: 154 LIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLRE 213
Query: 409 LGDHLNAKCHACIGGTN 459
G+ K GG++
Sbjct: 214 AGEPCGLKSICVYGGSS 230
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 32.7 bits (71), Expect = 0.13
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILXPTRELAQQIQKVVI 405
++ +A++G GKT F + IL+ + R L+L PTRELA+Q+
Sbjct: 136 LVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFD 195
Query: 406 ALGDHLNAKCHACIGG 453
A G L GG
Sbjct: 196 AYGGSLGLSSCCLYGG 211
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 32.7 bits (71), Expect = 0.13
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 53 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 226
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 227 XIMPCIQGR 253
+ P + GR
Sbjct: 141 EVDPRLVGR 149
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 31.9 bits (69), Expect = 0.24
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Frame = +1
Query: 229 NNALHPRTRVIAQAQSGTGKTATFSISILQQI-DTSIR----------ECQ--------- 348
N A + VI A++G+GKT F + ILQ++ D + E Q
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281
Query: 349 ALILXPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 483
ALI+ PTRELA Q+ + + +L+ K +GG + R+L
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRL 326
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 30.7 bits (66), Expect = 0.54
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 256 VIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILXPTRELAQQIQKVVIALGDHL 423
V+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q V L +
Sbjct: 194 VLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYH 253
Query: 424 NAKCHACIGG 453
+ IGG
Sbjct: 254 SQTVGKVIGG 263
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 155 NLKEELLRGIYAYGFEKPSAIQQRXIMPCI----QGRVLSLKPSQELEKLLLSLYRFYN 319
NL EE L ++ Y F+ P A ++ C+ QG+ + + P + + S++R N
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCMEKLRQGQAVDI-PKYDFKTYRSSVFRRVN 79
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 155 NLKEELLRGIYAYGFEKPSAIQQRXIMPCI----QGRVLSLKPSQELEKLLLSLYRFYN 319
NL EE L ++ Y F+ P A ++ C+ QG+ + + P + + S++R N
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCMEKLRQGQAVDI-PKYDFKTYRSSVFRRVN 79
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 235 ALHPRTRVIAQAQSGTGKTATFSISILQQIDTSIREC-QALILXPTRELA-QQIQKVVIA 408
AL+ R ++ +++ +++ +++EC +A+ P+ A Q++ + +
Sbjct: 232 ALYDRAISLSPENPAYRSNRAAALAASGRLEEAVKECLEAVRCDPSYARAHQRLASLYLR 291
Query: 409 LGDHLNAKCHACIGG 453
LG+ NA+ H C+ G
Sbjct: 292 LGEAENARRHLCVSG 306
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 262 AQAQSGTGKTATFSISILQQIDT-SIRECQALILXPTRELAQQ 387
A A +G+GKT F +L ++ S +A+IL P RELA Q
Sbjct: 183 ACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 27.9 bits (59), Expect = 3.8
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILXPTRELAQQ----IQKV 399
+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q +++
Sbjct: 137 MIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
Query: 400 VIALGD--HLNAKCHACIGGTNVREDI 474
V +L + + + CIGG ++R +
Sbjct: 197 VASLVEDGYPRLRSLLCIGGVDMRSQL 223
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 8 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 106
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +2
Query: 17 RRSEDWPEDSK---NGPSKDQGSYDGP 88
RR D P + +GPS+ +G YDGP
Sbjct: 265 RRGYDGPPQGRGGYDGPSQGRGGYDGP 291
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Frame = +1
Query: 271 QSGTGKTATFSISILQQI--------DTSIREC-QALILXPTRELAQQI 390
QSG+GKT + + ++Q++ S C + ++L PT ELA Q+
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +1
Query: 256 VIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILXPTRELAQQIQKVV 402
V+ A +GTGKT + ++ + + AL++ PTREL Q+ + +
Sbjct: 70 VLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 352 LILXPTRELAQQIQKVVIALGDHLNAKCHACIGGT 456
LIL T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 26.6 bits (56), Expect = 8.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 460 HWCHQCKHGI 431
HWCH C+ GI
Sbjct: 10 HWCHTCRRGI 19
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,336
Number of Sequences: 28952
Number of extensions: 238150
Number of successful extensions: 820
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -