Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30286
         (515 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24FV9 Cluster: 3'-5' exonuclease family protein; n=1; ...    35   0.96 
UniRef50_Q4YRI0 Cluster: Putative uncharacterized protein; n=2; ...    34   1.7  
UniRef50_Q4MY95 Cluster: DNA-directed RNA polymerase subunit bet...    34   2.2  
UniRef50_Q8WPW3 Cluster: ORF; n=1; Chironomus thummi|Rep: ORF - ...    33   5.1  
UniRef50_Q229W8 Cluster: Cation channel family protein; n=1; Tet...    32   6.8  

>UniRef50_Q24FV9 Cluster: 3'-5' exonuclease family protein; n=1;
           Tetrahymena thermophila SB210|Rep: 3'-5' exonuclease
           family protein - Tetrahymena thermophila SB210
          Length = 567

 Score = 35.1 bits (77), Expect = 0.96
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 51  SLLVMYVILRFFF-YQKCLFLSLFFFMIDQHNFVTIINNKKKLYQKCTYSWK*TYHFSVF 227
           S+L M+ IL+     Q    +   FF + QHN V I +  K+  ++ T +WK   H    
Sbjct: 121 SVLKMFTILKCLSSLQANSIIYKSFFCVIQHNSVKIPDQDKQYMEEITQAWK-YVHTDSL 179

Query: 228 SIRCLLLDLNNQTKQ 272
           S    + D+ NQ K+
Sbjct: 180 STFLTIFDITNQIKK 194


>UniRef50_Q4YRI0 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 348

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +2

Query: 149 NHYKQ--QKKIVSKVYLFMEIDLSFQCVFYTLLIT*F 253
           N YK+  +K+ +S+++ F +I+  F C+F+TLLI  F
Sbjct: 195 NSYKESYKKQYISRLFQFRDINCIFSCMFFTLLIIFF 231


>UniRef50_Q4MY95 Cluster: DNA-directed RNA polymerase subunit beta;
           n=1; Theileria parva|Rep: DNA-directed RNA polymerase
           subunit beta - Theileria parva
          Length = 1005

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = -3

Query: 258 YLNQVISNV*KTH*NDKSISMNKYTFDTIFFCCL*WLQNYVDQS*KK--INLKINTFGKK 85
           Y+  + +N  K H  DK+I++N +  +T+F   L  +  +++ + KK  I    N   K 
Sbjct: 202 YVMNLKNNNIKYHIFDKTININNFVNNTMFMDILSIVNKFLNLNLKKKFIQSSNNLINKS 261

Query: 84  KNEGLHTLQEEITDSIYIYIVD 19
            N  L T+  + T S+ I+ ++
Sbjct: 262 TNSVLKTIFRQFTKSVTIFDIE 283


>UniRef50_Q8WPW3 Cluster: ORF; n=1; Chironomus thummi|Rep: ORF -
           Chironomus thummi
          Length = 58

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 69  VILRFFFYQKCLFLSLFFFMIDQHNFVTII 158
           VI  FFF++KCL+L   F +ID  N V +I
Sbjct: 25  VIFLFFFFKKCLYLVQTFELIDDLNAVYLI 54


>UniRef50_Q229W8 Cluster: Cation channel family protein; n=1;
            Tetrahymena thermophila SB210|Rep: Cation channel family
            protein - Tetrahymena thermophila SB210
          Length = 1815

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +3

Query: 57   LVMYVILRFFFYQKCLFLSLFFFMIDQHNFVTIINNKKKLYQKCTYSWK*TYHFSVFSIR 236
            L++   ++ F+    +F S   F I  + F  I+ N+KK+Y+K    ++    F + SI 
Sbjct: 991  LIIVDYIQIFYLSMIIFDSFLGFHIGIYEFGEIVKNRKKVYEK---YYQDRLFFDLISIS 1047

Query: 237  CLLLDL 254
             LL+ L
Sbjct: 1048 SLLIGL 1053


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,807,265
Number of Sequences: 1657284
Number of extensions: 6920568
Number of successful extensions: 15381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15361
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)