Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30286
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   3.8  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   8.9  

>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 349 CIMIN*TGITVEYVFKNNYYSFTLYYCFV*LFK 251
           C+M+      +  + KN Y + T ++C    FK
Sbjct: 188 CVMLGLVMYAIANLLKNQYVAATFFFCLALTFK 220


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 329 GLIYHNTYFPGRNWVKSFSNT*KPLITVSGFFLRNP 436
           G+ YH +  PG +W        KP ++ +  F+R P
Sbjct: 185 GMFYHLSLLPGTSWRLPIRFV-KPALSPTHVFIRPP 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,371
Number of Sequences: 5004
Number of extensions: 32704
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)