Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30286
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine re...    29   2.0  
Z81029-1|CAB02697.1|  465|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    28   4.6  
U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine rece...    27   8.0  

>AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein13 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 84  FFYQKCLFLSLFFFMIDQHNFVTIIN-NKKKLYQKCTYSWK 203
           FF Q CL   LFF+ I    +V+ +N N+  ++   T++W+
Sbjct: 241 FFMQSCLQGILFFYEIFNFYYVSTLNTNQWYVFFTATFAWE 281


>Z81029-1|CAB02697.1|  465|Caenorhabditis elegans Hypothetical
           protein C01A2.1 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = -3

Query: 150 LQNYVDQS*KKINLKINTFGKKKNEGLHTLQEEITDSIYIYI 25
           L+N +    KKI+ KI+TFG++  + + T+Q +  +++ + +
Sbjct: 232 LRNDIQNLNKKIDKKISTFGERIEKKIGTIQPDELETVKVML 273


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 84  FFYQKCLFLSLFFFMIDQHNFVTIIN-NKKKLYQKCTYSWK 203
           FF Q CL   LFF+ +    ++  +N N+  ++   T++W+
Sbjct: 223 FFTQSCLQGILFFYEVFNFYYIVTLNTNQWFVFMTSTFAWE 263


>U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein201 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 84  FFYQKCLFLSLFFFMIDQHNFVTIINNKKKLYQKCTYSWK*TYHF 218
           F  Q  + L+LF +M+    F  +   + + Y  CT+SWK  + F
Sbjct: 104 FMIQVIIILALFAWMM----FAAVSIFENRFYTICTFSWKKHWSF 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,808,346
Number of Sequences: 27780
Number of extensions: 174057
Number of successful extensions: 362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)