Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30286
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   7.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   10.0 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   10.0 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   10.0 

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -2

Query: 34  YLYCRWNRYAL 2
           Y+YC W ++ L
Sbjct: 72  YMYCLWEQFGL 82


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 123 KKINLKINTFGKKKNEGL 70
           KK+  +INTF  K N+ L
Sbjct: 328 KKLREEINTFCPKNNKEL 345


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 466 LSHRRGLLDDRISQKKPRYC 407
           L+ R   LDD ISQ    +C
Sbjct: 146 LASRTNPLDDSISQANEGFC 165


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 466 LSHRRGLLDDRISQKKPRYC 407
           L+ R   LDD ISQ    +C
Sbjct: 141 LASRTNPLDDSISQANEGFC 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,746
Number of Sequences: 438
Number of extensions: 2668
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)