Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30281
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    43   4e-05
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    29   0.74 
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    28   0.98 
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    26   4.0  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   9.1  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.1  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
 Frame = +2

Query: 62  QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 226
           ++ G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCI
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59

Query: 227 LLAGRHAGKRLYLL 268
           LLAGR  GKR+ +L
Sbjct: 60  LLAGRFRGKRVVVL 73



 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 289 LLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPKHFNDDYF 423
           L+VTGP+  N  P+RR+  RYVI TS  +I +    + K F   YF
Sbjct: 80  LVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK-FTKAYF 124


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 318 IESKRSSN*KQTAGQNSNKYNLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIF 139
           ++ KRS+   ++   N     + P  LP+RR +T  I  L  ++  CLL    P  +R F
Sbjct: 7   VKEKRST--LRSVAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAF 64

Query: 138 S 136
           S
Sbjct: 65  S 65


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 498 EIRSSEQRKTDQKTVDEAVIKAIGARPDKKV 590
           E+ S ++RK D K   E +  A GA+P K V
Sbjct: 219 ELASEDRRKEDAKLEQENLFHAQGAKPQKAV 249


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 476 TSLPQKKRNTFI*AAQNRSEDSRRG 550
           T+ P  KRN+F+  AQN  +D  +G
Sbjct: 308 TTKPSIKRNSFVFQAQNDMQDDGKG 332


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
 Frame = +2

Query: 368 PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKR-------VMTSLPQKKRNTFI*AAQN 526
           P F SA S   N S+ +++      S V    K+       V   LPQ KR        N
Sbjct: 240 PPFGSAGSPSPNRSLNVSNNTTPPLSTVNKIIKKPKATTGKVKKRLPQAKRACAKCQKDN 299

Query: 527 RSEDSRRGCDQSHRSPTRQEGAPRIPQSGFGLRR 628
           +  D  R C +  ++ T     PR  +   G+RR
Sbjct: 300 KKCDDARPCQRCIKAKTDCIDLPR-KKRPTGVRR 332


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -2

Query: 548 LVDCLLIGFA-LLR*TYFS-FFVAKMSSPSLRLTVRLTHFLF--FLK*SSLKCFGSLKLP 381
           ++ C +  F+ +L   YF+ FFV + +SPS+ L  R        + K  S   +    +P
Sbjct: 6   ILSCSVYDFSSILLHQYFTQFFVLRYASPSMHLDWRFPSLRIHSYPKDQSTHAWKMHCMP 65

Query: 380 SEILVEVPI 354
           +EI+   PI
Sbjct: 66  TEIIAYQPI 74


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 371 EFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 496
           + HS+ S+ +NT+ +++S   +S+ +V+     V T     K
Sbjct: 735 DLHSSLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSK 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,667
Number of Sequences: 5004
Number of extensions: 53590
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)