Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30281
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 62 3e-10
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 60 1e-09
11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273... 30 1.8
09_02_0380 + 8227184-8227189,8227346-8227425,8228740-8228863,822... 28 7.1
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 7.1
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 62.5 bits (145), Expect = 3e-10
Identities = 37/92 (40%), Positives = 51/92 (55%)
Frame = +1
Query: 250 QEVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXX 429
+ VV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D YF
Sbjct: 91 KRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF-- 147
Query: 430 XXXXXXXXXXXXEGDDIFATKKEKYVHLSSAK 525
EG ++F T+KE +L K
Sbjct: 148 -ARDKKAKAKKTEG-ELFETEKEATKNLPDFK 177
Score = 35.1 bits (77), Expect = 0.047
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +2
Query: 77 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 241
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 242 HAGKRLYLLE 271
+ GKR+ L+
Sbjct: 88 YMGKRVVFLK 97
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 519 RKTDQKTVDEAVIKAIGARPDKKVLRG 599
+K DQK VD +IKAI PD K G
Sbjct: 177 KKDDQKAVDAELIKAIEVVPDLKSYLG 203
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 60.5 bits (140), Expect = 1e-09
Identities = 37/92 (40%), Positives = 50/92 (54%)
Frame = +1
Query: 250 QEVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXX 429
+ VV + L SGLLLVTGPF N P+RR+ Q YVI TST++ + + K F+D YF
Sbjct: 114 KRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF-- 170
Query: 430 XXXXXXXXXXXXEGDDIFATKKEKYVHLSSAK 525
EG ++F T+KE +L K
Sbjct: 171 -SRDKKQKAKKTEG-ELFETEKEATKNLPEFK 200
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 128 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRLYLLE 271
PT+ + +SS FS + + +R ++ GTV ILLAGR GKR+ L+
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLK 120
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 513 EQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAASDSVEP 632
E +K DQK VD +IKAI A PD K G + D +P
Sbjct: 198 EFKKEDQKVVDAELIKAIEAVPDLKTYLGARFSLRDGDKP 237
>11_04_0195 -
14725553-14725571,14725988-14726079,14727214-14727335,
14727588-14727597,14727798-14727896,14728046-14728612
Length = 302
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Frame = +2
Query: 380 SATSNCQNTSMMITSRRIRSA-SNVQSNAKRVMTSLPQKKRNTFI*AAQNRSEDSRRGCD 556
SA S I++RRI S N S + P R+T + S G D
Sbjct: 138 SARPTASPISSSISARRIPSLLCNHDSGLASSVYHAPPPPRSTPMDLLSVMQSQSMEGTD 197
Query: 557 QS-HRSPTRQEGAPRIPQSGFGLRRAN 634
S H SPT G + QSG ++ N
Sbjct: 198 ASCHHSPTTAAGEALVQQSGGQTKKIN 224
>09_02_0380 +
8227184-8227189,8227346-8227425,8228740-8228863,
8229547-8229576
Length = 79
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2
Query: 185 RRIRPNLKIGTVCILLAG--RHAGKRLYLLE 271
R +R + G+ CI LA R AGK+L+LL+
Sbjct: 15 RELRGGMGDGSTCICLANLPRSAGKKLFLLQ 45
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 338 FLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 460
FL+ + PP + H C N S++I R + N QSN
Sbjct: 545 FLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,045,197
Number of Sequences: 37544
Number of extensions: 405055
Number of successful extensions: 963
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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